Results 41 - 60 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 24977 | 0.78 | 0.064339 |
Target: 5'- cAGGCCGGCuugGUCGAgGCGGCauucGAGCGCg -3' miRNA: 3'- -UCCGGCUG---CAGCU-CGCCGac--CUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 15146 | 0.79 | 0.054569 |
Target: 5'- cGGCCGGCGUCGAGuCGGCgcggauguUGGAcggcacgcaGCGCu -3' miRNA: 3'- uCCGGCUGCAGCUC-GCCG--------ACCU---------CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 58633 | 0.83 | 0.030492 |
Target: 5'- cAGGCuCGGCaGUCGAGCGGCcGGGcGCGCg -3' miRNA: 3'- -UCCG-GCUG-CAGCUCGCCGaCCU-CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 56802 | 1.1 | 0.00029 |
Target: 5'- aAGGCCGACGUCGAGCGGCUGGAGCGCc -3' miRNA: 3'- -UCCGGCUGCAGCUCGCCGACCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 47147 | 0.71 | 0.206329 |
Target: 5'- aAGGUCGACG-CGAcCGGCgaGGcGCGCa -3' miRNA: 3'- -UCCGGCUGCaGCUcGCCGa-CCuCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 43837 | 0.71 | 0.211578 |
Target: 5'- cGGGCCGGcCG-CGcGCGGC-GGuGCGCc -3' miRNA: 3'- -UCCGGCU-GCaGCuCGCCGaCCuCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 24138 | 0.71 | 0.227451 |
Target: 5'- cGGgUGACGUucgaggaUGGGCGGCaGGAGgCGCa -3' miRNA: 3'- uCCgGCUGCA-------GCUCGCCGaCCUC-GCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 5045 | 0.69 | 0.297657 |
Target: 5'- cGGCCGGCGccugaUCGGcgggcaggcccGCGGC-GGcGGCGCg -3' miRNA: 3'- uCCGGCUGC-----AGCU-----------CGCCGaCC-UCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 51834 | 0.69 | 0.297657 |
Target: 5'- cGGCCGACGU-GcGCGaaguGCUGaAGCGCg -3' miRNA: 3'- uCCGGCUGCAgCuCGC----CGACcUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 44147 | 0.69 | 0.283864 |
Target: 5'- cGGCCgGACGcgCGcGCgaucgGGCaGGAGCGCg -3' miRNA: 3'- uCCGG-CUGCa-GCuCG-----CCGaCCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 27971 | 0.69 | 0.283188 |
Target: 5'- aAGGCCGGCaUUG-GCuGGCUGGAaucgcagGUGCa -3' miRNA: 3'- -UCCGGCUGcAGCuCG-CCGACCU-------CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 52819 | 0.69 | 0.277159 |
Target: 5'- uGGCaGGCGcucggCGAGCGGCUGaaggcuGCGCu -3' miRNA: 3'- uCCGgCUGCa----GCUCGCCGACcu----CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 56758 | 0.69 | 0.270581 |
Target: 5'- -cGCUGGCGUCGGGCGac--GAGCGCu -3' miRNA: 3'- ucCGGCUGCAGCUCGCcgacCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 59143 | 0.7 | 0.264129 |
Target: 5'- cGGGCCG-CGUCGccGCGcGCaUGGAGgaCGCg -3' miRNA: 3'- -UCCGGCuGCAGCu-CGC-CG-ACCUC--GCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 50794 | 0.7 | 0.251601 |
Target: 5'- -aGCCGAagguCGcCGAG-GGCaUGGAGCGCu -3' miRNA: 3'- ucCGGCU----GCaGCUCgCCG-ACCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 44980 | 0.7 | 0.233732 |
Target: 5'- aGGGCCGACGUgcagcagucCGcGCGGCaGGcGGCGg -3' miRNA: 3'- -UCCGGCUGCA---------GCuCGCCGaCC-UCGCg -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 5892 | 0.7 | 0.233732 |
Target: 5'- --aUCGACGUCGAuGUcgGGCgGGAGCGCc -3' miRNA: 3'- uccGGCUGCAGCU-CG--CCGaCCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 18106 | 0.71 | 0.228016 |
Target: 5'- cGGCCGGCGUCGAcaauUGGgaGGguaucgacgaAGCGCu -3' miRNA: 3'- uCCGGCUGCAGCUc---GCCgaCC----------UCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 17594 | 0.71 | 0.228016 |
Target: 5'- -aGCUGGCGgCGcAGCGcgcggaGCUGGAGCGCc -3' miRNA: 3'- ucCGGCUGCaGC-UCGC------CGACCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 47564 | 0.71 | 0.227451 |
Target: 5'- aAGG-CGACGUCGcccgacgaagcgaAGCGGCUGGcuuucAGCGa -3' miRNA: 3'- -UCCgGCUGCAGC-------------UCGCCGACC-----UCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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