miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 15717 0.68 0.342128
Target:  5'- -cGUCGGCGcCGGGCGGCUcgucgcGGcaGGUGCg -3'
miRNA:   3'- ucCGGCUGCaGCUCGCCGA------CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 38554 0.68 0.34999
Target:  5'- aGGaGCCGGCGUUGcgcGCGGUUcGGGCGg -3'
miRNA:   3'- -UC-CGGCUGCAGCu--CGCCGAcCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 40237 0.67 0.408546
Target:  5'- -cGCCcGCGcgcggCGGGCGGUUGGucagucuGCGCg -3'
miRNA:   3'- ucCGGcUGCa----GCUCGCCGACCu------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 38047 0.66 0.463342
Target:  5'- cGGGCCG----UGAGCGGCUugccGGccuGCGCg -3'
miRNA:   3'- -UCCGGCugcaGCUCGCCGA----CCu--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 10877 0.7 0.251601
Target:  5'- cAGGCCGuCGuagaUCGAGCGgaucacgcccucGCUGGuguaguGCGCg -3'
miRNA:   3'- -UCCGGCuGC----AGCUCGC------------CGACCu-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 30438 0.69 0.283864
Target:  5'- cGGCCGGCGgguugUCGAucgGCGGCacGGugccGCGCa -3'
miRNA:   3'- uCCGGCUGC-----AGCU---CGCCGa-CCu---CGCG- -5'
24091 3' -61.6 NC_005262.1 + 29033 0.67 0.374341
Target:  5'- -cGCCGAgcUCGAGCGGCgccGGcacgacGCGCa -3'
miRNA:   3'- ucCGGCUgcAGCUCGCCGa--CCu-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 60343 0.66 0.463342
Target:  5'- gAGGUCGACGggcgguUCGAGCuGauccccGAGCGCg -3'
miRNA:   3'- -UCCGGCUGC------AGCUCGcCgac---CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 34030 0.68 0.329815
Target:  5'- cGGCaCuACGcCGGGCGGUUgaggcggguuagccgGGAGCGCc -3'
miRNA:   3'- uCCG-GcUGCaGCUCGCCGA---------------CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 26542 0.66 0.463342
Target:  5'- cGGCCGuuGuUCGuGCGGUUcacgcGGAagGCGCg -3'
miRNA:   3'- uCCGGCugC-AGCuCGCCGA-----CCU--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 18889 0.68 0.352374
Target:  5'- -cGCCG-UGUCGAugaacuggucuugcaGCGGCUGGAacacauccuuguaGCGCu -3'
miRNA:   3'- ucCGGCuGCAGCU---------------CGCCGACCU-------------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 14238 0.68 0.334394
Target:  5'- cGGCCu-CGUUcuGCGcgaccuGCUGGAGCGCg -3'
miRNA:   3'- uCCGGcuGCAGcuCGC------CGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 37765 0.67 0.391199
Target:  5'- -cGCCG-CGgCGAGCuGCUGG-GCGUa -3'
miRNA:   3'- ucCGGCuGCaGCUCGcCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 33174 0.67 0.408546
Target:  5'- -uGCCGAgCGUCGgcGGCGGCUcGAucuucGCGCc -3'
miRNA:   3'- ucCGGCU-GCAGC--UCGCCGAcCU-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 39586 0.66 0.425464
Target:  5'- cGuGCCGGCGcagCGucGCGGCUGccgccucGGGCGUg -3'
miRNA:   3'- uC-CGGCUGCa--GCu-CGCCGAC-------CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 51277 0.66 0.463342
Target:  5'- gAGGCgaucGCGUCGcGCGGCaucUGaAGCGCg -3'
miRNA:   3'- -UCCGgc--UGCAGCuCGCCG---ACcUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 12428 0.71 0.216941
Target:  5'- uGGCCGGCGUCGcggacggcGCGGUgccGAGCuGCa -3'
miRNA:   3'- uCCGGCUGCAGCu-------CGCCGac-CUCG-CG- -5'
24091 3' -61.6 NC_005262.1 + 12616 0.7 0.239567
Target:  5'- cGGGCCGccGCGUCGu-CGGCUGccugcuGCGCg -3'
miRNA:   3'- -UCCGGC--UGCAGCucGCCGACcu----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 30746 0.69 0.270581
Target:  5'- aGGGCCcgcuuaguacGACGUCGGGCGGUacGucagcaucaGGCGCa -3'
miRNA:   3'- -UCCGG----------CUGCAGCUCGCCGacC---------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 206 0.69 0.283864
Target:  5'- -cGCCGGCGg-GGGCGGC-GGAGC-Ca -3'
miRNA:   3'- ucCGGCUGCagCUCGCCGaCCUCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.