miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 40963 0.67 0.408546
Target:  5'- cAGGCugucgaacaaCGGCGUCGGGUuucuGGC-GGcGGCGCu -3'
miRNA:   3'- -UCCG----------GCUGCAGCUCG----CCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 27856 0.67 0.403292
Target:  5'- -uGCCG-CGUCGcaaggacggcggcaaGGCGGCc-GAGCGCa -3'
miRNA:   3'- ucCGGCuGCAGC---------------UCGCCGacCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 59143 0.7 0.264129
Target:  5'- cGGGCCG-CGUCGccGCGcGCaUGGAGgaCGCg -3'
miRNA:   3'- -UCCGGCuGCAGCu-CGC-CG-ACCUC--GCG- -5'
24091 3' -61.6 NC_005262.1 + 56758 0.69 0.270581
Target:  5'- -cGCUGGCGUCGGGCGac--GAGCGCu -3'
miRNA:   3'- ucCGGCUGCAGCUCGCcgacCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 52819 0.69 0.277159
Target:  5'- uGGCaGGCGcucggCGAGCGGCUGaaggcuGCGCu -3'
miRNA:   3'- uCCGgCUGCa----GCUCGCCGACcu----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 27971 0.69 0.283188
Target:  5'- aAGGCCGGCaUUG-GCuGGCUGGAaucgcagGUGCa -3'
miRNA:   3'- -UCCGGCUGcAGCuCG-CCGACCU-------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 44147 0.69 0.283864
Target:  5'- cGGCCgGACGcgCGcGCgaucgGGCaGGAGCGCg -3'
miRNA:   3'- uCCGG-CUGCa-GCuCG-----CCGaCCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 51834 0.69 0.297657
Target:  5'- cGGCCGACGU-GcGCGaaguGCUGaAGCGCg -3'
miRNA:   3'- uCCGGCUGCAgCuCGC----CGACcUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 5045 0.69 0.297657
Target:  5'- cGGCCGGCGccugaUCGGcgggcaggcccGCGGC-GGcGGCGCg -3'
miRNA:   3'- uCCGGCUGC-----AGCU-----------CGCCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 36307 0.67 0.408546
Target:  5'- cGGUCGACuUCGgugGGgGGCcGGuGCGCu -3'
miRNA:   3'- uCCGGCUGcAGC---UCgCCGaCCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 5293 0.66 0.417398
Target:  5'- uGGUCGAUcacgcgGUCGAgGCGGUcGGAGCu- -3'
miRNA:   3'- uCCGGCUG------CAGCU-CGCCGaCCUCGcg -5'
24091 3' -61.6 NC_005262.1 + 12805 0.66 0.444638
Target:  5'- uGGgCGGCG-CGcAGcCGGCgcgugaagaaGGAGCGCg -3'
miRNA:   3'- uCCgGCUGCaGC-UC-GCCGa---------CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 2463 0.66 0.444638
Target:  5'- cGGUgGACGUUGAGCaugcGCgUGGugccGCGCu -3'
miRNA:   3'- uCCGgCUGCAGCUCGc---CG-ACCu---CGCG- -5'
24091 3' -61.6 NC_005262.1 + 24908 0.66 0.435447
Target:  5'- cGGCCagccggagGACGcCGAGgcaUGGCgGGAuGCGCa -3'
miRNA:   3'- uCCGG--------CUGCaGCUC---GCCGaCCU-CGCG- -5'
24091 3' -61.6 NC_005262.1 + 62668 0.66 0.435447
Target:  5'- gGGGUgGGuuuaGUCcgcccGGCGGCggcaggGGAGCGCg -3'
miRNA:   3'- -UCCGgCUg---CAGc----UCGCCGa-----CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 24327 0.66 0.434534
Target:  5'- uGGUCGGCGcgaUCGAcauGCGGCUcugcgucGGcGCGCc -3'
miRNA:   3'- uCCGGCUGC---AGCU---CGCCGA-------CCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 49395 0.66 0.43271
Target:  5'- -cGCgGGCGUCGcaacuggucuguucGGCGGCaUGGGcgaccGCGCa -3'
miRNA:   3'- ucCGgCUGCAGC--------------UCGCCG-ACCU-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 17081 0.66 0.426365
Target:  5'- uAGGCgCGccCGUCGAcGCGGC-GGGcCGCg -3'
miRNA:   3'- -UCCG-GCu-GCAGCU-CGCCGaCCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 3619 0.66 0.426365
Target:  5'- cAGGCUGuACa-CGAGguccauCGGCUGGGcGCGCa -3'
miRNA:   3'- -UCCGGC-UGcaGCUC------GCCGACCU-CGCG- -5'
24091 3' -61.6 NC_005262.1 + 17399 0.66 0.417398
Target:  5'- cGGCCGACaauGcCGAGaC-GCUGG-GCGCc -3'
miRNA:   3'- uCCGGCUG---CaGCUC-GcCGACCuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.