miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 5293 0.66 0.417398
Target:  5'- uGGUCGAUcacgcgGUCGAgGCGGUcGGAGCu- -3'
miRNA:   3'- uCCGGCUG------CAGCU-CGCCGaCCUCGcg -5'
24091 3' -61.6 NC_005262.1 + 17399 0.66 0.417398
Target:  5'- cGGCCGACaauGcCGAGaC-GCUGG-GCGCc -3'
miRNA:   3'- uCCGGCUG---CaGCUC-GcCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 3619 0.66 0.426365
Target:  5'- cAGGCUGuACa-CGAGguccauCGGCUGGGcGCGCa -3'
miRNA:   3'- -UCCGGC-UGcaGCUC------GCCGACCU-CGCG- -5'
24091 3' -61.6 NC_005262.1 + 17081 0.66 0.426365
Target:  5'- uAGGCgCGccCGUCGAcGCGGC-GGGcCGCg -3'
miRNA:   3'- -UCCG-GCu-GCAGCU-CGCCGaCCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 9134 0.66 0.426365
Target:  5'- gAGGaCCGGCGcCGGGcCGGUcGGAaUGCg -3'
miRNA:   3'- -UCC-GGCUGCaGCUC-GCCGaCCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 49395 0.66 0.43271
Target:  5'- -cGCgGGCGUCGcaacuggucuguucGGCGGCaUGGGcgaccGCGCa -3'
miRNA:   3'- ucCGgCUGCAGC--------------UCGCCG-ACCU-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 24327 0.66 0.434534
Target:  5'- uGGUCGGCGcgaUCGAcauGCGGCUcugcgucGGcGCGCc -3'
miRNA:   3'- uCCGGCUGC---AGCU---CGCCGA-------CCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 62668 0.66 0.435447
Target:  5'- gGGGUgGGuuuaGUCcgcccGGCGGCggcaggGGAGCGCg -3'
miRNA:   3'- -UCCGgCUg---CAGc----UCGCCGa-----CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 40963 0.67 0.408546
Target:  5'- cAGGCugucgaacaaCGGCGUCGGGUuucuGGC-GGcGGCGCu -3'
miRNA:   3'- -UCCG----------GCUGCAGCUCG----CCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 27856 0.67 0.403292
Target:  5'- -uGCCG-CGUCGcaaggacggcggcaaGGCGGCc-GAGCGCa -3'
miRNA:   3'- ucCGGCuGCAGC---------------UCGCCGacCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 40724 0.67 0.399813
Target:  5'- cGGcGCUGACGcccUCGAGCacgGGC-GGcGGCGCg -3'
miRNA:   3'- -UC-CGGCUGC---AGCUCG---CCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 60391 0.68 0.311965
Target:  5'- cGGCCGcaagauCGUCG-GCGGCau-GGCGCa -3'
miRNA:   3'- uCCGGCu-----GCAGCuCGCCGaccUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 61430 0.68 0.357176
Target:  5'- cGGCCGAggaauuccaCGUCGcgaagaaGGCGGCggacGGcgaAGCGCu -3'
miRNA:   3'- uCCGGCU---------GCAGC-------UCGCCGa---CC---UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 23355 0.68 0.35798
Target:  5'- cGGCCGGCGUgaagcgCGcGGCGGCgaaGGcccgcaacgugaAGCGCc -3'
miRNA:   3'- uCCGGCUGCA------GC-UCGCCGa--CC------------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 61148 0.68 0.35798
Target:  5'- uGGCgcagcagaucgCGGCGgCGGGCGaGCUGacGGGCGCg -3'
miRNA:   3'- uCCG-----------GCUGCaGCUCGC-CGAC--CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 11055 0.68 0.35798
Target:  5'- cAGGCCGcaGCGUcgccugagccCGAGCGGCcaaaGGGCGg -3'
miRNA:   3'- -UCCGGC--UGCA----------GCUCGCCGac--CUCGCg -5'
24091 3' -61.6 NC_005262.1 + 43343 0.68 0.35798
Target:  5'- cAGG-CGGCGaUCGAcGCGGCgaaGGCGCa -3'
miRNA:   3'- -UCCgGCUGC-AGCU-CGCCGaccUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 28859 0.67 0.382708
Target:  5'- cAGGUCGGCGgcgucacggaCGAGauGCUGGGaCGCa -3'
miRNA:   3'- -UCCGGCUGCa---------GCUCgcCGACCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 55402 0.67 0.382708
Target:  5'- gAGcGCCG-CaUCGAGCaGCUcGAGCGCc -3'
miRNA:   3'- -UC-CGGCuGcAGCUCGcCGAcCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 2257 0.67 0.391199
Target:  5'- cGGGCCG-CGUCGAuGaCGGCcc--GCGCa -3'
miRNA:   3'- -UCCGGCuGCAGCU-C-GCCGaccuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.