Results 101 - 108 of 108 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24091 | 3' | -61.6 | NC_005262.1 | + | 61430 | 0.68 | 0.357176 |
|
Target: 5'- cGGCCGAggaauuccaCGUCGcgaagaaGGCGGCggacGGcgaAGCGCu -3' miRNA: 3'- uCCGGCU---------GCAGC-------UCGCCGa---CC---UCGCG- -5' |
|||||||
| 24091 | 3' | -61.6 | NC_005262.1 | + | 23355 | 0.68 | 0.35798 |
|
Target: 5'- cGGCCGGCGUgaagcgCGcGGCGGCgaaGGcccgcaacgugaAGCGCc -3' miRNA: 3'- uCCGGCUGCA------GC-UCGCCGa--CC------------UCGCG- -5' |
|||||||
| 24091 | 3' | -61.6 | NC_005262.1 | + | 61148 | 0.68 | 0.35798 |
|
Target: 5'- uGGCgcagcagaucgCGGCGgCGGGCGaGCUGacGGGCGCg -3' miRNA: 3'- uCCG-----------GCUGCaGCUCGC-CGAC--CUCGCG- -5' |
|||||||
| 24091 | 3' | -61.6 | NC_005262.1 | + | 11055 | 0.68 | 0.35798 |
|
Target: 5'- cAGGCCGcaGCGUcgccugagccCGAGCGGCcaaaGGGCGg -3' miRNA: 3'- -UCCGGC--UGCA----------GCUCGCCGac--CUCGCg -5' |
|||||||
| 24091 | 3' | -61.6 | NC_005262.1 | + | 43343 | 0.68 | 0.35798 |
|
Target: 5'- cAGG-CGGCGaUCGAcGCGGCgaaGGCGCa -3' miRNA: 3'- -UCCgGCUGC-AGCU-CGCCGaccUCGCG- -5' |
|||||||
| 24091 | 3' | -61.6 | NC_005262.1 | + | 12170 | 0.67 | 0.374341 |
|
Target: 5'- aAGGCCGcGCuGUCuGcGCGGCaGGAGCa- -3' miRNA: 3'- -UCCGGC-UG-CAG-CuCGCCGaCCUCGcg -5' |
|||||||
| 24091 | 3' | -61.6 | NC_005262.1 | + | 28859 | 0.67 | 0.382708 |
|
Target: 5'- cAGGUCGGCGgcgucacggaCGAGauGCUGGGaCGCa -3' miRNA: 3'- -UCCGGCUGCa---------GCUCgcCGACCUcGCG- -5' |
|||||||
| 24091 | 3' | -61.6 | NC_005262.1 | + | 24908 | 0.66 | 0.435447 |
|
Target: 5'- cGGCCagccggagGACGcCGAGgcaUGGCgGGAuGCGCa -3' miRNA: 3'- uCCGG--------CUGCaGCUC---GCCGaCCU-CGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home