miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 60960 0.66 0.420971
Target:  5'- cGGGCacgccagcgcgcaaaCGAgGUCGAgGCGcaGgUGGAGCGCc -3'
miRNA:   3'- -UCCG---------------GCUgCAGCU-CGC--CgACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 8387 0.66 0.417398
Target:  5'- -aGCCGGCGcUCGAGCuGCUcGAugcgGCGCu -3'
miRNA:   3'- ucCGGCUGC-AGCUCGcCGAcCU----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 5293 0.66 0.417398
Target:  5'- uGGUCGAUcacgcgGUCGAgGCGGUcGGAGCu- -3'
miRNA:   3'- uCCGGCUG------CAGCU-CGCCGaCCUCGcg -5'
24091 3' -61.6 NC_005262.1 + 17399 0.66 0.417398
Target:  5'- cGGCCGACaauGcCGAGaC-GCUGG-GCGCc -3'
miRNA:   3'- uCCGGCUG---CaGCUC-GcCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 33174 0.67 0.408546
Target:  5'- -uGCCGAgCGUCGgcGGCGGCUcGAucuucGCGCc -3'
miRNA:   3'- ucCGGCU-GCAGC--UCGCCGAcCU-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 36307 0.67 0.408546
Target:  5'- cGGUCGACuUCGgugGGgGGCcGGuGCGCu -3'
miRNA:   3'- uCCGGCUGcAGC---UCgCCGaCCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 40963 0.67 0.408546
Target:  5'- cAGGCugucgaacaaCGGCGUCGGGUuucuGGC-GGcGGCGCu -3'
miRNA:   3'- -UCCG----------GCUGCAGCUCG----CCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 40237 0.67 0.408546
Target:  5'- -cGCCcGCGcgcggCGGGCGGUUGGucagucuGCGCg -3'
miRNA:   3'- ucCGGcUGCa----GCUCGCCGACCu------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 27856 0.67 0.403292
Target:  5'- -uGCCG-CGUCGcaaggacggcggcaaGGCGGCc-GAGCGCa -3'
miRNA:   3'- ucCGGCuGCAGC---------------UCGCCGacCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 40724 0.67 0.399813
Target:  5'- cGGcGCUGACGcccUCGAGCacgGGC-GGcGGCGCg -3'
miRNA:   3'- -UC-CGGCUGC---AGCUCG---CCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 10461 0.67 0.391199
Target:  5'- cGGUCGGCGagGuAGCGGCgc--GCGCg -3'
miRNA:   3'- uCCGGCUGCagC-UCGCCGaccuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 37765 0.67 0.391199
Target:  5'- -cGCCG-CGgCGAGCuGCUGG-GCGUa -3'
miRNA:   3'- ucCGGCuGCaGCUCGcCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 57330 0.67 0.391199
Target:  5'- uGGGCCcGCGUCGAuGcCGGCgucucgccGGAGC-Cg -3'
miRNA:   3'- -UCCGGcUGCAGCU-C-GCCGa-------CCUCGcG- -5'
24091 3' -61.6 NC_005262.1 + 31818 0.67 0.391199
Target:  5'- gGGGCCauGAUGUCG-GUcGCUGcGAGCGa -3'
miRNA:   3'- -UCCGG--CUGCAGCuCGcCGAC-CUCGCg -5'
24091 3' -61.6 NC_005262.1 + 2257 0.67 0.391199
Target:  5'- cGGGCCG-CGUCGAuGaCGGCcc--GCGCa -3'
miRNA:   3'- -UCCGGCuGCAGCU-C-GCCGaccuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 52452 0.67 0.382708
Target:  5'- cGuGCCGcGCG-CGAGCGGCgucuugcggaGGAGgGCc -3'
miRNA:   3'- uC-CGGC-UGCaGCUCGCCGa---------CCUCgCG- -5'
24091 3' -61.6 NC_005262.1 + 28859 0.67 0.382708
Target:  5'- cAGGUCGGCGgcgucacggaCGAGauGCUGGGaCGCa -3'
miRNA:   3'- -UCCGGCUGCa---------GCUCgcCGACCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 55402 0.67 0.382708
Target:  5'- gAGcGCCG-CaUCGAGCaGCUcGAGCGCc -3'
miRNA:   3'- -UC-CGGCuGcAGCUCGcCGAcCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 29033 0.67 0.374341
Target:  5'- -cGCCGAgcUCGAGCGGCgccGGcacgacGCGCa -3'
miRNA:   3'- ucCGGCUgcAGCUCGCCGa--CCu-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 12170 0.67 0.374341
Target:  5'- aAGGCCGcGCuGUCuGcGCGGCaGGAGCa- -3'
miRNA:   3'- -UCCGGC-UG-CAG-CuCGCCGaCCUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.