miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 5' -53.6 NC_005262.1 + 32860 0.66 0.838621
Target:  5'- aGCGCGCCGucAUG-CCGGAAUcGGCg -3'
miRNA:   3'- -CGCGUGGUgcUGCuGGUCUUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 60072 0.66 0.838621
Target:  5'- uGCGCaacGCCGCGcGCGACgCGcuGACGGGCa -3'
miRNA:   3'- -CGCG---UGGUGC-UGCUG-GUc-UUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 58901 0.66 0.838621
Target:  5'- cGCGCugCGCGAUcaGGCCGGcggcccGACcgauGGCg -3'
miRNA:   3'- -CGCGugGUGCUG--CUGGUC------UUGu---UCGa -5'
24091 5' -53.6 NC_005262.1 + 23316 0.66 0.838621
Target:  5'- aGCGCAUCAaGGCG-CCGcGcACGAGCa -3'
miRNA:   3'- -CGCGUGGUgCUGCuGGU-CuUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 7261 0.66 0.838621
Target:  5'- cGCGCugCuCGACGgauGCCGGGAaccacGGCg -3'
miRNA:   3'- -CGCGugGuGCUGC---UGGUCUUgu---UCGa -5'
24091 5' -53.6 NC_005262.1 + 15592 0.66 0.838621
Target:  5'- cGCGCGCgCGCGaggagcGCGugCGGcAgGAGCg -3'
miRNA:   3'- -CGCGUG-GUGC------UGCugGUCuUgUUCGa -5'
24091 5' -53.6 NC_005262.1 + 47413 0.66 0.838621
Target:  5'- cGCGCagaaaagcaaGCU-CGACGcCCAGAACcAGCa -3'
miRNA:   3'- -CGCG----------UGGuGCUGCuGGUCUUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 11386 0.66 0.833295
Target:  5'- cGCGCcuCCGCGAucgccuccagcgucuCGGCCAGAAgGuuGCUc -3'
miRNA:   3'- -CGCGu-GGUGCU---------------GCUGGUCUUgUu-CGA- -5'
24091 5' -53.6 NC_005262.1 + 14508 0.66 0.829701
Target:  5'- cCGCGCUACaaGGCGAUCGGcAACAgcauGGCa -3'
miRNA:   3'- cGCGUGGUG--CUGCUGGUC-UUGU----UCGa -5'
24091 5' -53.6 NC_005262.1 + 58624 0.66 0.829701
Target:  5'- cGCGC-CCGCGACG-CCGGccgucaccGAUcAGCg -3'
miRNA:   3'- -CGCGuGGUGCUGCuGGUC--------UUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 60136 0.66 0.829701
Target:  5'- aGCGacgGCCGCGAguaCaACCGGGAgAAGCUg -3'
miRNA:   3'- -CGCg--UGGUGCU---GcUGGUCUUgUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 38560 0.66 0.829701
Target:  5'- -gGCACCGCcGCgGGCCGGAugAaagaAGCa -3'
miRNA:   3'- cgCGUGGUGcUG-CUGGUCUugU----UCGa -5'
24091 5' -53.6 NC_005262.1 + 60433 0.66 0.829701
Target:  5'- cGCGaACCAa-GCGACCgAGAACGcGCUg -3'
miRNA:   3'- -CGCgUGGUgcUGCUGG-UCUUGUuCGA- -5'
24091 5' -53.6 NC_005262.1 + 35952 0.66 0.829701
Target:  5'- cGCGCcuauCCGCGugGugCcguuuGAACuGGCa -3'
miRNA:   3'- -CGCGu---GGUGCugCugGu----CUUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 17601 0.66 0.829701
Target:  5'- gGCGCAgCGCG-CGgaGCUGGAGCGccAGCa -3'
miRNA:   3'- -CGCGUgGUGCuGC--UGGUCUUGU--UCGa -5'
24091 5' -53.6 NC_005262.1 + 31072 0.66 0.829701
Target:  5'- aCGCGCU-CGcCGACCugaAGGGCGAGCc -3'
miRNA:   3'- cGCGUGGuGCuGCUGG---UCUUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 57767 0.66 0.826984
Target:  5'- cCGCACCAC-ACcACCAcccgagagagaaauGAGCGAGCa -3'
miRNA:   3'- cGCGUGGUGcUGcUGGU--------------CUUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 36187 0.66 0.824249
Target:  5'- aGUGCAgCuCGACGGCCuguucgcugucgagcGGAuugGCAGGCUu -3'
miRNA:   3'- -CGCGUgGuGCUGCUGG---------------UCU---UGUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 17492 0.66 0.820574
Target:  5'- cGCGCGCCGCGcGCGACgCGucGAUcGGCa -3'
miRNA:   3'- -CGCGUGGUGC-UGCUG-GUc-UUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 53452 0.66 0.820574
Target:  5'- aGCGCGgCGcCGGCGuCgAGGACAacGGCg -3'
miRNA:   3'- -CGCGUgGU-GCUGCuGgUCUUGU--UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.