miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 3' -55.8 NC_005262.1 + 5035 0.66 0.710813
Target:  5'- aGUUGcucGCCgGCCGGcGCcuGAUCGGCGGg -3'
miRNA:   3'- -CGACua-UGG-CGGCU-CGu-CUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 17669 0.67 0.700219
Target:  5'- -----aGCgCGCCGAGCuGGAagCGGCGAa -3'
miRNA:   3'- cgacuaUG-GCGGCUCG-UCUa-GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 21557 0.67 0.700219
Target:  5'- aGCaGAUGCCGCCGccuggaaacgagGGCGGcuaCGGCu- -3'
miRNA:   3'- -CGaCUAUGGCGGC------------UCGUCua-GCCGcu -5'
24092 3' -55.8 NC_005262.1 + 52160 0.67 0.700219
Target:  5'- cGCcGGcGCCGCCGAGCcGAU-GGUGc -3'
miRNA:   3'- -CGaCUaUGGCGGCUCGuCUAgCCGCu -5'
24092 3' -55.8 NC_005262.1 + 21875 0.67 0.700219
Target:  5'- cGCUGAaGCCGaCCGcGCAGc-CGGaCGAc -3'
miRNA:   3'- -CGACUaUGGC-GGCuCGUCuaGCC-GCU- -5'
24092 3' -55.8 NC_005262.1 + 16358 0.67 0.68956
Target:  5'- cGCUGAUcggcGCCGCCGcGU---UCGGCa- -3'
miRNA:   3'- -CGACUA----UGGCGGCuCGucuAGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 12383 0.67 0.68956
Target:  5'- cGCgcgcGCCGCCGAGCAcg-CGGUGc -3'
miRNA:   3'- -CGacuaUGGCGGCUCGUcuaGCCGCu -5'
24092 3' -55.8 NC_005262.1 + 8214 0.67 0.678848
Target:  5'- -aUGAU-CCGCgCGGGCcauGAgcugUCGGCGAa -3'
miRNA:   3'- cgACUAuGGCG-GCUCGu--CU----AGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 43330 0.67 0.668093
Target:  5'- --gGAaGCCGCUGAaCAGG-CGGCGAu -3'
miRNA:   3'- cgaCUaUGGCGGCUcGUCUaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 3400 0.67 0.667016
Target:  5'- uGCgccAUGCCGCCGAcgaucuuGCGGc-CGGCGAc -3'
miRNA:   3'- -CGac-UAUGGCGGCU-------CGUCuaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 22153 0.67 0.657306
Target:  5'- gGCUGcccgcAUCGCCGAGCuGGa-GGCGAa -3'
miRNA:   3'- -CGACua---UGGCGGCUCGuCUagCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 56279 0.67 0.657306
Target:  5'- --cGGgcUCGgCGAGCAG-UCGGCGAa -3'
miRNA:   3'- cgaCUauGGCgGCUCGUCuAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 33163 0.67 0.657306
Target:  5'- cGCgGGcACCuuGCCGAGCG--UCGGCGGc -3'
miRNA:   3'- -CGaCUaUGG--CGGCUCGUcuAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 28628 0.67 0.656226
Target:  5'- -gUGAccucauUGCCGCC-AGCgucgcccGGAUCGGCGGu -3'
miRNA:   3'- cgACU------AUGGCGGcUCG-------UCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 53089 0.68 0.635673
Target:  5'- uGCUGuauCCGCaGAGCAacaucaucGUCGGCGAc -3'
miRNA:   3'- -CGACuauGGCGgCUCGUc-------UAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 2754 0.68 0.632426
Target:  5'- --cGAUcugGCUGCCGAagugguugcgguuaGCAGAcgucUCGGCGAg -3'
miRNA:   3'- cgaCUA---UGGCGGCU--------------CGUCU----AGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 40483 0.68 0.624847
Target:  5'- gGCUGGUAUCugGCggaCGGGCAGAaCGGCa- -3'
miRNA:   3'- -CGACUAUGG--CG---GCUCGUCUaGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 44498 0.68 0.624847
Target:  5'- -----cAUCGCCGAGCAcGUCGGCu- -3'
miRNA:   3'- cgacuaUGGCGGCUCGUcUAGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 33839 0.68 0.624847
Target:  5'- cGCUGGgagguCC-CCGAGCuGAUCGaGUGGa -3'
miRNA:   3'- -CGACUau---GGcGGCUCGuCUAGC-CGCU- -5'
24092 3' -55.8 NC_005262.1 + 46411 0.68 0.624847
Target:  5'- aUUGucgGCCGCCGAGUcGAcCGGCa- -3'
miRNA:   3'- cGACua-UGGCGGCUCGuCUaGCCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.