miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 5' -52.7 NC_005262.1 + 62085 0.73 0.501381
Target:  5'- gCUUCUCGAccUCAUGcgucgccgCCGCGGCAacCGCg -3'
miRNA:   3'- -GAAGGGCU--AGUACaa------GGUGCCGU--GCG- -5'
24092 5' -52.7 NC_005262.1 + 25917 0.73 0.511823
Target:  5'- aCUUCCCGccCGUGccUCCG-GGCGCGCc -3'
miRNA:   3'- -GAAGGGCuaGUACa-AGGUgCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 36333 0.73 0.505547
Target:  5'- gUUCCCGGUgCGUGcgCCGucaggcuugaucgauCGGCACGUg -3'
miRNA:   3'- gAAGGGCUA-GUACaaGGU---------------GCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 5052 0.74 0.447743
Target:  5'- aCUgCUCGAUCGUGUaggcgccgaauuccUCCGCGGUcaGCGCc -3'
miRNA:   3'- -GAaGGGCUAGUACA--------------AGGUGCCG--UGCG- -5'
24092 5' -52.7 NC_005262.1 + 12299 0.78 0.266499
Target:  5'- uUUCUCGGcaaCGUGUUCgACGGCAUGCg -3'
miRNA:   3'- gAAGGGCUa--GUACAAGgUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 20710 0.78 0.276172
Target:  5'- uCUUgCCCGGUCAgGUcgaugaugaagcugCCGCGGCGCGCg -3'
miRNA:   3'- -GAA-GGGCUAGUaCAa-------------GGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 57096 1.13 0.001288
Target:  5'- gCUUCCCGAUCAUGUUCCACGGCACGCa -3'
miRNA:   3'- -GAAGGGCUAGUACAAGGUGCCGUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.