Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24092 | 5' | -52.7 | NC_005262.1 | + | 10445 | 0.69 | 0.722593 |
Target: 5'- ---gCCGAUCAgGUUCgCgcggucggcgagguaGCGGCGCGCg -3' miRNA: 3'- gaagGGCUAGUaCAAG-G---------------UGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 9492 | 0.71 | 0.597993 |
Target: 5'- -gUCCUGGcggcUCAUGUUCgAgaGGCGCGCc -3' miRNA: 3'- gaAGGGCU----AGUACAAGgUg-CCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 8813 | 0.66 | 0.893396 |
Target: 5'- cCUUCCUGA--AUGccgcgCCAgaUGGCGCGCu -3' miRNA: 3'- -GAAGGGCUagUACaa---GGU--GCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 7519 | 0.68 | 0.80014 |
Target: 5'- -aUCCauCGggCAgGUUCgGCGGCGCGUc -3' miRNA: 3'- gaAGG--GCuaGUaCAAGgUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 6444 | 0.68 | 0.809691 |
Target: 5'- -gUCCagGAgcUCAgccUGUUCCgggaACGGCGCGCc -3' miRNA: 3'- gaAGGg-CU--AGU---ACAAGG----UGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 5053 | 0.66 | 0.893396 |
Target: 5'- --gCCUGAUCGgcgGgcaggcCCGCGGCggcgGCGCg -3' miRNA: 3'- gaaGGGCUAGUa--Caa----GGUGCCG----UGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 5052 | 0.74 | 0.447743 |
Target: 5'- aCUgCUCGAUCGUGUaggcgccgaauuccUCCGCGGUcaGCGCc -3' miRNA: 3'- -GAaGGGCUAGUACA--------------AGGUGCCG--UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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