Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24092 | 5' | -52.7 | NC_005262.1 | + | 35054 | 0.67 | 0.845927 |
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Target: 5'- uCUUCaCGGUCAUcacGgcgUCCG-GGCGCGCg -3' miRNA: 3'- -GAAGgGCUAGUA---Ca--AGGUgCCGUGCG- -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 58293 | 0.67 | 0.828222 |
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Target: 5'- -aUCCCGGUCcgGUcgUCGCGGCcuACa- -3' miRNA: 3'- gaAGGGCUAGuaCAa-GGUGCCG--UGcg -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 57649 | 0.67 | 0.819055 |
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Target: 5'- -aUCUCGAUCAgcaaaaUCC-CGGcCGCGCa -3' miRNA: 3'- gaAGGGCUAGUaca---AGGuGCC-GUGCG- -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 14355 | 0.67 | 0.819055 |
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Target: 5'- cCUUCUCGGUCAcGaucUUCGCGaGUGCGCg -3' miRNA: 3'- -GAAGGGCUAGUaCa--AGGUGC-CGUGCG- -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 6444 | 0.68 | 0.809691 |
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Target: 5'- -gUCCagGAgcUCAgccUGUUCCgggaACGGCGCGCc -3' miRNA: 3'- gaAGGg-CU--AGU---ACAAGG----UGCCGUGCG- -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 53221 | 0.68 | 0.790413 |
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Target: 5'- ---gCCGcgC-UGcUCCGCGGUACGCu -3' miRNA: 3'- gaagGGCuaGuACaAGGUGCCGUGCG- -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 18143 | 0.66 | 0.900413 |
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Target: 5'- --gCUCGAUC-UGUUCgACGaGCucGCGCg -3' miRNA: 3'- gaaGGGCUAGuACAAGgUGC-CG--UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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