Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24092 | 5' | -52.7 | NC_005262.1 | + | 59123 | 0.72 | 0.587033 |
Target: 5'- --gCCCGAUCcgG--CCGCGGCAUGg -3' miRNA: 3'- gaaGGGCUAGuaCaaGGUGCCGUGCg -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 21203 | 0.69 | 0.728971 |
Target: 5'- ---gCCGGUCAgGUcgUCCgGCGGCGCGUu -3' miRNA: 3'- gaagGGCUAGUaCA--AGG-UGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 25917 | 0.73 | 0.511823 |
Target: 5'- aCUUCCCGccCGUGccUCCG-GGCGCGCc -3' miRNA: 3'- -GAAGGGCuaGUACa-AGGUgCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 5052 | 0.74 | 0.447743 |
Target: 5'- aCUgCUCGAUCGUGUaggcgccgaauuccUCCGCGGUcaGCGCc -3' miRNA: 3'- -GAaGGGCUAGUACA--------------AGGUGCCG--UGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 20710 | 0.78 | 0.276172 |
Target: 5'- uCUUgCCCGGUCAgGUcgaugaugaagcugCCGCGGCGCGCg -3' miRNA: 3'- -GAA-GGGCUAGUaCAa-------------GGUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 9492 | 0.71 | 0.597993 |
Target: 5'- -gUCCUGGcggcUCAUGUUCgAgaGGCGCGCc -3' miRNA: 3'- gaAGGGCU----AGUACAAGgUg-CCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 36333 | 0.73 | 0.505547 |
Target: 5'- gUUCCCGGUgCGUGcgCCGucaggcuugaucgauCGGCACGUg -3' miRNA: 3'- gAAGGGCUA-GUACaaGGU---------------GCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 62085 | 0.73 | 0.501381 |
Target: 5'- gCUUCUCGAccUCAUGcgucgccgCCGCGGCAacCGCg -3' miRNA: 3'- -GAAGGGCU--AGUACaa------GGUGCCGU--GCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 51400 | 0.71 | 0.597993 |
Target: 5'- --gCCUGAcCGUGUgcaccgcgugcUCgGCGGCGCGCg -3' miRNA: 3'- gaaGGGCUaGUACA-----------AGgUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 24457 | 0.71 | 0.608981 |
Target: 5'- --gCCCGAUCgAUGgcgcUgCACGGCACGa -3' miRNA: 3'- gaaGGGCUAG-UACa---AgGUGCCGUGCg -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 32073 | 0.69 | 0.760283 |
Target: 5'- -gUCCCGGUCAgcaUCgACGGCgACGa -3' miRNA: 3'- gaAGGGCUAGUacaAGgUGCCG-UGCg -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 42171 | 0.68 | 0.80014 |
Target: 5'- ---gCCGAUCGucuguacgugaUGggCgACGGCGCGCc -3' miRNA: 3'- gaagGGCUAGU-----------ACaaGgUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 7519 | 0.68 | 0.80014 |
Target: 5'- -aUCCauCGggCAgGUUCgGCGGCGCGUc -3' miRNA: 3'- gaAGG--GCuaGUaCAAGgUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 53555 | 0.67 | 0.819055 |
Target: 5'- --cCCCGAgaUgGUGcUCgGCGcGCACGCg -3' miRNA: 3'- gaaGGGCU--AgUACaAGgUGC-CGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 61638 | 0.67 | 0.837183 |
Target: 5'- --gCUCGAgggCGaggaggaagugcUGUaCCGCGGCGCGCu -3' miRNA: 3'- gaaGGGCUa--GU------------ACAaGGUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 26035 | 0.67 | 0.845927 |
Target: 5'- --gCCCag-CAgcucgCCGCGGCGCGCa -3' miRNA: 3'- gaaGGGcuaGUacaa-GGUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 49408 | 0.67 | 0.845927 |
Target: 5'- ---aCUGGUC-UGUUCgGCGGCAUGg -3' miRNA: 3'- gaagGGCUAGuACAAGgUGCCGUGCg -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 19669 | 0.67 | 0.854446 |
Target: 5'- aCUUCUcgcuuuugaaagCGAUUAcGUUCCGCaGCGCGUc -3' miRNA: 3'- -GAAGG------------GCUAGUaCAAGGUGcCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 5053 | 0.66 | 0.893396 |
Target: 5'- --gCCUGAUCGgcgGgcaggcCCGCGGCggcgGCGCg -3' miRNA: 3'- gaaGGGCUAGUa--Caa----GGUGCCG----UGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 53893 | 0.66 | 0.893396 |
Target: 5'- gUUCCUGAagUCGUGgacgggUCUGCGcGaCGCGCu -3' miRNA: 3'- gAAGGGCU--AGUACa-----AGGUGC-C-GUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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