Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24092 | 5' | -52.7 | NC_005262.1 | + | 40462 | 0.67 | 0.854446 |
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Target: 5'- -aUCCCGGccgugCAUGggCCG-GGCugGUa -3' miRNA: 3'- gaAGGGCUa----GUACaaGGUgCCGugCG- -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 38787 | 0.67 | 0.854446 |
|
Target: 5'- gUUCgaGAUCAUGcgcUgCACGGCGCGa -3' miRNA: 3'- gAAGggCUAGUACa--AgGUGCCGUGCg -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 19669 | 0.67 | 0.854446 |
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Target: 5'- aCUUCUcgcuuuugaaagCGAUUAcGUUCCGCaGCGCGUc -3' miRNA: 3'- -GAAGG------------GCUAGUaCAAGGUGcCGUGCG- -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 49408 | 0.67 | 0.845927 |
|
Target: 5'- ---aCUGGUC-UGUUCgGCGGCAUGg -3' miRNA: 3'- gaagGGCUAGuACAAGgUGCCGUGCg -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 26035 | 0.67 | 0.845927 |
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Target: 5'- --gCCCag-CAgcucgCCGCGGCGCGCa -3' miRNA: 3'- gaaGGGcuaGUacaa-GGUGCCGUGCG- -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 61638 | 0.67 | 0.837183 |
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Target: 5'- --gCUCGAgggCGaggaggaagugcUGUaCCGCGGCGCGCu -3' miRNA: 3'- gaaGGGCUa--GU------------ACAaGGUGCCGUGCG- -5' |
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| 24092 | 5' | -52.7 | NC_005262.1 | + | 57096 | 1.13 | 0.001288 |
|
Target: 5'- gCUUCCCGAUCAUGUUCCACGGCACGCa -3' miRNA: 3'- -GAAGGGCUAGUACAAGGUGCCGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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