miRNA display CGI

Results 61 - 70 of 70 are showing below:
Show page: 1 2 3 4

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
24093	3'	-62.5	NC_005262.1	+	60179	0.71	0.222681
	Target:  5'- gCGCUCGGCCagugggCGGcaACCggcaaggaGCCGGcCGGCg -3' miRNA:   3'- -GCGAGCUGG------GCC--UGGa-------CGGCCaGCCG- -5'
24093	3'	-62.5	NC_005262.1	+	35156	0.71	0.20176
	Target:  5'- cCGC-CGAUCCGGGCgacGCUGG-CGGCa -3' miRNA:   3'- -GCGaGCUGGGCCUGga-CGGCCaGCCG- -5'
24093	3'	-62.5	NC_005262.1	+	29945	0.71	0.196803
	Target:  5'- aGgaCGACCCGGACgCgGgCGG-CGGCg -3' miRNA:   3'- gCgaGCUGGGCCUG-GaCgGCCaGCCG- -5'
24093	3'	-62.5	NC_005262.1	+	30154	0.72	0.182568
	Target:  5'- gCGCUCGucaGCCuCGGAcaCCUgcGCCGG-CGGCu -3' miRNA:   3'- -GCGAGC---UGG-GCCU--GGA--CGGCCaGCCG- -5'
24093	3'	-62.5	NC_005262.1	+	28837	0.72	0.178029
	Target:  5'- gCGCUCGAUCCaGAugauCCaGCaGGUCGGCg -3' miRNA:   3'- -GCGAGCUGGGcCU----GGaCGgCCAGCCG- -5'
24093	3'	-62.5	NC_005262.1	+	9121	0.72	0.178029
	Target:  5'- cCGCagCGGCUaugaGGACCggcgccggGCCGGUCGGa -3' miRNA:   3'- -GCGa-GCUGGg---CCUGGa-------CGGCCAGCCg -5'
24093	3'	-62.5	NC_005262.1	+	52943	0.72	0.17359
	Target:  5'- gCGC-CG-CCUGGGCUUcGCCGG-CGGCa -3' miRNA:   3'- -GCGaGCuGGGCCUGGA-CGGCCaGCCG- -5'
24093	3'	-62.5	NC_005262.1	+	34090	0.76	0.098154
	Target:  5'- uGCUUGGCCCGGugCgGgCGGUUGcGCa -3' miRNA:   3'- gCGAGCUGGGCCugGaCgGCCAGC-CG- -5'
24093	3'	-62.5	NC_005262.1	+	15957	0.77	0.0837
	Target:  5'- aCGCUCGGCuuCCGGucgACCUGCUGGcgaucgacgagaUCGGCg -3' miRNA:   3'- -GCGAGCUG--GGCC---UGGACGGCC------------AGCCG- -5'
24093	3'	-62.5	NC_005262.1	+	57200	1.11	0.000213
	Target:  5'- cCGCUCGACCCGGACCUGCCGGUCGGCg -3' miRNA:   3'- -GCGAGCUGGGCCUGGACGGCCAGCCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home