miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 30154 0.72 0.182568
Target:  5'- gCGCUCGucaGCCuCGGAcaCCUgcGCCGG-CGGCu -3'
miRNA:   3'- -GCGAGC---UGG-GCCU--GGA--CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 31091 0.67 0.388312
Target:  5'- aGCUCGAugaugucgcccaCCUGGAg--GCCGG-CGGCc -3'
miRNA:   3'- gCGAGCU------------GGGCCUggaCGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 31915 0.7 0.228192
Target:  5'- cCGCUCGACgcgCCGGAcgucgccaCCUGCUGuaCGGCg -3'
miRNA:   3'- -GCGAGCUG---GGCCU--------GGACGGCcaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 32783 0.68 0.351065
Target:  5'- aGCUCGACaCCGGcgGCgC-GCCGGccaucgcguucgacgUCGGCc -3'
miRNA:   3'- gCGAGCUG-GGCC--UG-GaCGGCC---------------AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 33150 0.68 0.332663
Target:  5'- cCGCguugucCGACgCGGGCaccuUGCCGagcGUCGGCg -3'
miRNA:   3'- -GCGa-----GCUGgGCCUGg---ACGGC---CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 34090 0.76 0.098154
Target:  5'- uGCUUGGCCCGGugCgGgCGGUUGcGCa -3'
miRNA:   3'- gCGAGCUGGGCCugGaCgGCCAGC-CG- -5'
24093 3' -62.5 NC_005262.1 + 34622 0.68 0.317877
Target:  5'- aGCUCGGCgaCGGccGCCUGacgcaUGGUCGcGCg -3'
miRNA:   3'- gCGAGCUGg-GCC--UGGACg----GCCAGC-CG- -5'
24093 3' -62.5 NC_005262.1 + 35156 0.71 0.20176
Target:  5'- cCGC-CGAUCCGGGCgacGCUGG-CGGCa -3'
miRNA:   3'- -GCGaGCUGGGCCUGga-CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 43824 0.71 0.211998
Target:  5'- gGCgacaCGGCCgCGGGCCgGCCGcGcgCGGCg -3'
miRNA:   3'- gCGa---GCUGG-GCCUGGaCGGC-Ca-GCCG- -5'
24093 3' -62.5 NC_005262.1 + 45229 0.68 0.303591
Target:  5'- gGCUCGGCCUGaAC--GCCGGcaacUCGGCg -3'
miRNA:   3'- gCGAGCUGGGCcUGgaCGGCC----AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 46139 0.69 0.263712
Target:  5'- aGCUCGGCgcgCUGGcgggcgaucucuGCCUGCUGcUCGGCg -3'
miRNA:   3'- gCGAGCUG---GGCC------------UGGACGGCcAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 46449 0.66 0.43163
Target:  5'- cCGCcCG-CgCCGGACCcgaaUGCCGcGcCGGCc -3'
miRNA:   3'- -GCGaGCuG-GGCCUGG----ACGGC-CaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 47726 0.67 0.371802
Target:  5'- gGCUCGccgccuguAUCUGGugCgccGCCGGccgCGGCg -3'
miRNA:   3'- gCGAGC--------UGGGCCugGa--CGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 48342 0.71 0.196803
Target:  5'- aGCUcggcacgacCGACCCGG-CgCUGCUGG-CGGCc -3'
miRNA:   3'- gCGA---------GCUGGGCCuG-GACGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 48576 0.69 0.276512
Target:  5'- uGCUCGACCCGaacgaaGCgaGCCGccUCGGCc -3'
miRNA:   3'- gCGAGCUGGGCc-----UGgaCGGCc-AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 49841 0.69 0.276512
Target:  5'- gCGCgaaUGGCCCGG---UGCCGG-CGGCg -3'
miRNA:   3'- -GCGa--GCUGGGCCuggACGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 50817 0.67 0.396745
Target:  5'- aCGCgCGGguCgCGGucgucgacGCCgaGCCGGUCGGCg -3'
miRNA:   3'- -GCGaGCU--GgGCC--------UGGa-CGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 51203 0.68 0.303591
Target:  5'- gCGCUC-AUCCGcGacGCCUcGCCGG-CGGCa -3'
miRNA:   3'- -GCGAGcUGGGC-C--UGGA-CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 51238 0.67 0.358942
Target:  5'- aGCUCGACgagcgccgCCGcGACCUGCCGccgcaacauggaGGCg -3'
miRNA:   3'- gCGAGCUG--------GGC-CUGGACGGCcag---------CCG- -5'
24093 3' -62.5 NC_005262.1 + 52943 0.72 0.17359
Target:  5'- gCGC-CG-CCUGGGCUUcGCCGG-CGGCa -3'
miRNA:   3'- -GCGaGCuGGGCCUGGA-CGGCCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.