miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 19012 0.68 0.317877
Target:  5'- aGCUCGucgaGCUCGG-CCUGCCGcGcgcUGGCg -3'
miRNA:   3'- gCGAGC----UGGGCCuGGACGGC-Ca--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 18937 0.67 0.388312
Target:  5'- aGCgUGAUUCGGAugucguCCaugGCCGGUUGGCc -3'
miRNA:   3'- gCGaGCUGGGCCU------GGa--CGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 17063 0.69 0.283096
Target:  5'- gGCgaUCGAUCCGGuCgUGCCGGauugcgcCGGCu -3'
miRNA:   3'- gCG--AGCUGGGCCuGgACGGCCa------GCCG- -5'
24093 3' -62.5 NC_005262.1 + 16039 0.69 0.276512
Target:  5'- cCGCgCGAUgCCGGguucGCCgcgGCCGG-CGGCg -3'
miRNA:   3'- -GCGaGCUG-GGCC----UGGa--CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 15957 0.77 0.0837
Target:  5'- aCGCUCGGCuuCCGGucgACCUGCUGGcgaucgacgagaUCGGCg -3'
miRNA:   3'- -GCGAGCUG--GGCC---UGGACGGCC------------AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 15742 0.68 0.324469
Target:  5'- uCGCUgaGAacuUCUGGAcgaagcaCCUGCCGGcCGGCg -3'
miRNA:   3'- -GCGAg-CU---GGGCCU-------GGACGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 14459 0.66 0.449731
Target:  5'- aGCgCGGCgCGcGCCUGCUcGUCGGUc -3'
miRNA:   3'- gCGaGCUGgGCcUGGACGGcCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 13851 0.66 0.43163
Target:  5'- gGCUCGAacgucacgccaUCCGGGCCgGUC-GUCaGGCg -3'
miRNA:   3'- gCGAGCU-----------GGGCCUGGaCGGcCAG-CCG- -5'
24093 3' -62.5 NC_005262.1 + 13771 0.71 0.201259
Target:  5'- gCGC-CGGCUCGGGCUUcacuucggugggcGCCGGcgCGGCu -3'
miRNA:   3'- -GCGaGCUGGGCCUGGA-------------CGGCCa-GCCG- -5'
24093 3' -62.5 NC_005262.1 + 13708 0.68 0.347948
Target:  5'- aGgUCGAagugCCuGACgUGCUGGUCGGUg -3'
miRNA:   3'- gCgAGCUg---GGcCUGgACGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 13688 0.67 0.377526
Target:  5'- gCGCUCGGCCggcuucuguucgcgCGGcGCggGuUCGGUCGGCg -3'
miRNA:   3'- -GCGAGCUGG--------------GCC-UGgaC-GGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12889 0.67 0.379997
Target:  5'- aCGCUCGugcgcaucaGCCCcGGCCUGCUGGaCGa- -3'
miRNA:   3'- -GCGAGC---------UGGGcCUGGACGGCCaGCcg -5'
24093 3' -62.5 NC_005262.1 + 12817 0.67 0.371802
Target:  5'- uGCUCGACcuucuCCGGcgagaacucgGCCUGC--GUCGGCu -3'
miRNA:   3'- gCGAGCUG-----GGCC----------UGGACGgcCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12602 0.68 0.340244
Target:  5'- cCGCgCGGCUccagCGGGCC-GCCGcgucGUCGGCu -3'
miRNA:   3'- -GCGaGCUGG----GCCUGGaCGGC----CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12312 0.68 0.317877
Target:  5'- cCGCUCGAUCUcguaGGACUgGCCGcccUUGGCg -3'
miRNA:   3'- -GCGAGCUGGG----CCUGGaCGGCc--AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 11124 0.69 0.296635
Target:  5'- uGCaaCGACCCGGACUU-CUGGgcgUGGCu -3'
miRNA:   3'- gCGa-GCUGGGCCUGGAcGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 9984 0.67 0.371802
Target:  5'- aGCUCGauGCCCGugccgcugucGACCUGCaucaGGUugcCGGUa -3'
miRNA:   3'- gCGAGC--UGGGC----------CUGGACGg---CCA---GCCG- -5'
24093 3' -62.5 NC_005262.1 + 9161 0.67 0.355777
Target:  5'- aGUUCGAgCCGGA-CUGCuCGG-CGGa -3'
miRNA:   3'- gCGAGCUgGGCCUgGACG-GCCaGCCg -5'
24093 3' -62.5 NC_005262.1 + 9121 0.72 0.178029
Target:  5'- cCGCagCGGCUaugaGGACCggcgccggGCCGGUCGGa -3'
miRNA:   3'- -GCGa-GCUGGg---CCUGGa-------CGGCCAGCCg -5'
24093 3' -62.5 NC_005262.1 + 8136 0.67 0.379997
Target:  5'- uGUUCGugaCCGG-CgUGCCGGacgCGGCc -3'
miRNA:   3'- gCGAGCug-GGCCuGgACGGCCa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.