miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 33150 0.68 0.332663
Target:  5'- cCGCguugucCGACgCGGGCaccuUGCCGagcGUCGGCg -3'
miRNA:   3'- -GCGa-----GCUGgGCCUGg---ACGGC---CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12312 0.68 0.317877
Target:  5'- cCGCUCGAUCUcguaGGACUgGCCGcccUUGGCg -3'
miRNA:   3'- -GCGAGCUGGG----CCUGGaCGGCc--AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 53239 0.68 0.317877
Target:  5'- aCGCUgCGGCUgcgCGcGGCCgGUCGcGUCGGCa -3'
miRNA:   3'- -GCGA-GCUGG---GC-CUGGaCGGC-CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 19012 0.68 0.317877
Target:  5'- aGCUCGucgaGCUCGG-CCUGCCGcGcgcUGGCg -3'
miRNA:   3'- gCGAGC----UGGGCCuGGACGGC-Ca--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 34622 0.68 0.317877
Target:  5'- aGCUCGGCgaCGGccGCCUGacgcaUGGUCGcGCg -3'
miRNA:   3'- gCGAGCUGg-GCC--UGGACg----GCCAGC-CG- -5'
24093 3' -62.5 NC_005262.1 + 51203 0.68 0.303591
Target:  5'- gCGCUC-AUCCGcGacGCCUcGCCGG-CGGCa -3'
miRNA:   3'- -GCGAGcUGGGC-C--UGGA-CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 2787 0.69 0.296635
Target:  5'- aCGuCUCGGCgaGcGGCUUGaugaCGGUCGGCa -3'
miRNA:   3'- -GC-GAGCUGggC-CUGGACg---GCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 9984 0.67 0.371802
Target:  5'- aGCUCGauGCCCGugccgcugucGACCUGCaucaGGUugcCGGUa -3'
miRNA:   3'- gCGAGC--UGGGC----------CUGGACGg---CCA---GCCG- -5'
24093 3' -62.5 NC_005262.1 + 12817 0.67 0.371802
Target:  5'- uGCUCGACcuucuCCGGcgagaacucgGCCUGC--GUCGGCu -3'
miRNA:   3'- gCGAGCUG-----GGCC----------UGGACGgcCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 29199 0.66 0.43163
Target:  5'- cCGCUCGAUCUcguGGAUCacggcGCCGcaCGGCg -3'
miRNA:   3'- -GCGAGCUGGG---CCUGGa----CGGCcaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 13851 0.66 0.43163
Target:  5'- gGCUCGAacgucacgccaUCCGGGCCgGUC-GUCaGGCg -3'
miRNA:   3'- gCGAGCU-----------GGGCCUGGaCGGcCAG-CCG- -5'
24093 3' -62.5 NC_005262.1 + 5168 0.66 0.43163
Target:  5'- cCGCUCGACugCCGaGCCUGaCGGUgCaGCg -3'
miRNA:   3'- -GCGAGCUG--GGCcUGGACgGCCA-GcCG- -5'
24093 3' -62.5 NC_005262.1 + 30099 0.66 0.42274
Target:  5'- uGUuggCGGCCgGGACCuUGCCGaauUUGGCc -3'
miRNA:   3'- gCGa--GCUGGgCCUGG-ACGGCc--AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 3586 0.66 0.42274
Target:  5'- aGCUUG-CC--GACCUcGCCGGcCGGCu -3'
miRNA:   3'- gCGAGCuGGgcCUGGA-CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 7982 0.66 0.413961
Target:  5'- gCGCUcaCGACCuCGuaGCC-GCCGG-CGGCg -3'
miRNA:   3'- -GCGA--GCUGG-GCc-UGGaCGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 50817 0.67 0.396745
Target:  5'- aCGCgCGGguCgCGGucgucgacGCCgaGCCGGUCGGCg -3'
miRNA:   3'- -GCGaGCU--GgGCC--------UGGa-CGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 31091 0.67 0.388312
Target:  5'- aGCUCGAugaugucgcccaCCUGGAg--GCCGG-CGGCc -3'
miRNA:   3'- gCGAGCU------------GGGCCUggaCGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 8136 0.67 0.379997
Target:  5'- uGUUCGugaCCGG-CgUGCCGGacgCGGCc -3'
miRNA:   3'- gCGAGCug-GGCCuGgACGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 7040 0.67 0.379997
Target:  5'- gCGCUCGucGCCCGacGCCaGCgCGG-CGGCc -3'
miRNA:   3'- -GCGAGC--UGGGCc-UGGaCG-GCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 13688 0.67 0.377526
Target:  5'- gCGCUCGGCCggcuucuguucgcgCGGcGCggGuUCGGUCGGCg -3'
miRNA:   3'- -GCGAGCUGG--------------GCC-UGgaC-GGCCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.