miRNA display CGI


Results 61 - 70 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 50817 0.67 0.396745
Target:  5'- aCGCgCGGguCgCGGucgucgacGCCgaGCCGGUCGGCg -3'
miRNA:   3'- -GCGaGCU--GgGCC--------UGGa-CGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 31091 0.67 0.388312
Target:  5'- aGCUCGAugaugucgcccaCCUGGAg--GCCGG-CGGCc -3'
miRNA:   3'- gCGAGCU------------GGGCCUggaCGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 8136 0.67 0.379997
Target:  5'- uGUUCGugaCCGG-CgUGCCGGacgCGGCc -3'
miRNA:   3'- gCGAGCug-GGCCuGgACGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 7040 0.67 0.379997
Target:  5'- gCGCUCGucGCCCGacGCCaGCgCGG-CGGCc -3'
miRNA:   3'- -GCGAGC--UGGGCc-UGGaCG-GCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 13688 0.67 0.377526
Target:  5'- gCGCUCGGCCggcuucuguucgcgCGGcGCggGuUCGGUCGGCg -3'
miRNA:   3'- -GCGAGCUGG--------------GCC-UGgaC-GGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12817 0.67 0.371802
Target:  5'- uGCUCGACcuucuCCGGcgagaacucgGCCUGC--GUCGGCu -3'
miRNA:   3'- gCGAGCUG-----GGCC----------UGGACGgcCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 9984 0.67 0.371802
Target:  5'- aGCUCGauGCCCGugccgcugucGACCUGCaucaGGUugcCGGUa -3'
miRNA:   3'- gCGAGC--UGGGC----------CUGGACGg---CCA---GCCG- -5'
24093 3' -62.5 NC_005262.1 + 7001 0.67 0.363728
Target:  5'- cCGCUCGACgUCGG-CCUucagGCCGGcCaGCu -3'
miRNA:   3'- -GCGAGCUG-GGCCuGGA----CGGCCaGcCG- -5'
24093 3' -62.5 NC_005262.1 + 51238 0.67 0.358942
Target:  5'- aGCUCGACgagcgccgCCGcGACCUGCCGccgcaacauggaGGCg -3'
miRNA:   3'- gCGAGCUG--------GGC-CUGGACGGCcag---------CCG- -5'
24093 3' -62.5 NC_005262.1 + 14459 0.66 0.449731
Target:  5'- aGCgCGGCgCGcGCCUGCUcGUCGGUc -3'
miRNA:   3'- gCGaGCUGgGCcUGGACGGcCAGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.