miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 9161 0.67 0.355777
Target:  5'- aGUUCGAgCCGGA-CUGCuCGG-CGGa -3'
miRNA:   3'- gCGAGCUgGGCCUgGACG-GCCaGCCg -5'
24093 3' -62.5 NC_005262.1 + 8136 0.67 0.379997
Target:  5'- uGUUCGugaCCGG-CgUGCCGGacgCGGCc -3'
miRNA:   3'- gCGAGCug-GGCCuGgACGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 34090 0.76 0.098154
Target:  5'- uGCUUGGCCCGGugCgGgCGGUUGcGCa -3'
miRNA:   3'- gCGAGCUGGGCCugGaCgGCCAGC-CG- -5'
24093 3' -62.5 NC_005262.1 + 16039 0.69 0.276512
Target:  5'- cCGCgCGAUgCCGGguucGCCgcgGCCGG-CGGCg -3'
miRNA:   3'- -GCGaGCUG-GGCC----UGGa--CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 33150 0.68 0.332663
Target:  5'- cCGCguugucCGACgCGGGCaccuUGCCGagcGUCGGCg -3'
miRNA:   3'- -GCGa-----GCUGgGCCUGg---ACGGC---CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 31091 0.67 0.388312
Target:  5'- aGCUCGAugaugucgcccaCCUGGAg--GCCGG-CGGCc -3'
miRNA:   3'- gCGAGCU------------GGGCCUggaCGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 17063 0.69 0.283096
Target:  5'- gGCgaUCGAUCCGGuCgUGCCGGauugcgcCGGCu -3'
miRNA:   3'- gCG--AGCUGGGCCuGgACGGCCa------GCCG- -5'
24093 3' -62.5 NC_005262.1 + 50817 0.67 0.396745
Target:  5'- aCGCgCGGguCgCGGucgucgacGCCgaGCCGGUCGGCg -3'
miRNA:   3'- -GCGaGCU--GgGCC--------UGGa-CGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 7982 0.66 0.413961
Target:  5'- gCGCUcaCGACCuCGuaGCC-GCCGG-CGGCg -3'
miRNA:   3'- -GCGA--GCUGG-GCc-UGGaCGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12312 0.68 0.317877
Target:  5'- cCGCUCGAUCUcguaGGACUgGCCGcccUUGGCg -3'
miRNA:   3'- -GCGAGCUGGG----CCUGGaCGGCc--AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 59977 0.71 0.206824
Target:  5'- gCGCUCGGCaccuuccuCCGGGCCgucgaggaugGCCGGguuccgacCGGCu -3'
miRNA:   3'- -GCGAGCUG--------GGCCUGGa---------CGGCCa-------GCCG- -5'
24093 3' -62.5 NC_005262.1 + 9984 0.67 0.371802
Target:  5'- aGCUCGauGCCCGugccgcugucGACCUGCaucaGGUugcCGGUa -3'
miRNA:   3'- gCGAGC--UGGGC----------CUGGACGg---CCA---GCCG- -5'
24093 3' -62.5 NC_005262.1 + 7040 0.67 0.379997
Target:  5'- gCGCUCGucGCCCGacGCCaGCgCGG-CGGCc -3'
miRNA:   3'- -GCGAGC--UGGGCc-UGGaCG-GCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 34622 0.68 0.317877
Target:  5'- aGCUCGGCgaCGGccGCCUGacgcaUGGUCGcGCg -3'
miRNA:   3'- gCGAGCUGg-GCC--UGGACg----GCCAGC-CG- -5'
24093 3' -62.5 NC_005262.1 + 46139 0.69 0.263712
Target:  5'- aGCUCGGCgcgCUGGcgggcgaucucuGCCUGCUGcUCGGCg -3'
miRNA:   3'- gCGAGCUG---GGCC------------UGGACGGCcAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 22217 0.69 0.270051
Target:  5'- gCGCUCGACaagcucaCGGccgcGCCgcccacGCCGGcCGGCc -3'
miRNA:   3'- -GCGAGCUGg------GCC----UGGa-----CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 23344 0.69 0.263712
Target:  5'- gCGCUCGACCaCGG-CCggcgugaagcGCgCGG-CGGCg -3'
miRNA:   3'- -GCGAGCUGG-GCCuGGa---------CG-GCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12889 0.67 0.379997
Target:  5'- aCGCUCGugcgcaucaGCCCcGGCCUGCUGGaCGa- -3'
miRNA:   3'- -GCGAGC---------UGGGcCUGGACGGCCaGCcg -5'
24093 3' -62.5 NC_005262.1 + 28083 0.67 0.371802
Target:  5'- gGCUCGACauGGACgaCUGCCGGUa--- -3'
miRNA:   3'- gCGAGCUGggCCUG--GACGGCCAgccg -5'
24093 3' -62.5 NC_005262.1 + 47726 0.67 0.371802
Target:  5'- gGCUCGccgccuguAUCUGGugCgccGCCGGccgCGGCg -3'
miRNA:   3'- gCGAGC--------UGGGCCugGa--CGGCCa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.