miRNA display CGI


Results 61 - 70 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 58916 0.68 0.347948
Target:  5'- gGCcggCGGCCC-GACCgaugGCgcgcgcuucuCGGUCGGCg -3'
miRNA:   3'- gCGa--GCUGGGcCUGGa---CG----------GCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 28083 0.67 0.371802
Target:  5'- gGCUCGACauGGACgaCUGCCGGUa--- -3'
miRNA:   3'- gCGAGCUGggCCUG--GACGGCCAgccg -5'
24093 3' -62.5 NC_005262.1 + 13708 0.68 0.347948
Target:  5'- aGgUCGAagugCCuGACgUGCUGGUCGGUg -3'
miRNA:   3'- gCgAGCUg---GGcCUGgACGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 4885 0.68 0.332663
Target:  5'- gCGC-CGACUC-GACCUGCU--UCGGCg -3'
miRNA:   3'- -GCGaGCUGGGcCUGGACGGccAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 15742 0.68 0.324469
Target:  5'- uCGCUgaGAacuUCUGGAcgaagcaCCUGCCGGcCGGCg -3'
miRNA:   3'- -GCGAg-CU---GGGCCU-------GGACGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 5095 0.68 0.317877
Target:  5'- gGCUCGgcggugcgcGCCCGGuucacgauGCCUGCCaugcgcgacGGgCGGCg -3'
miRNA:   3'- gCGAGC---------UGGGCC--------UGGACGG---------CCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 45229 0.68 0.303591
Target:  5'- gGCUCGGCCUGaAC--GCCGGcaacUCGGCg -3'
miRNA:   3'- gCGAGCUGGGCcUGgaCGGCC----AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 11124 0.69 0.296635
Target:  5'- uGCaaCGACCCGGACUU-CUGGgcgUGGCu -3'
miRNA:   3'- gCGa-GCUGGGCCUGGAcGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 27338 0.69 0.295259
Target:  5'- uGCUCGaccucaucaagauGCCCGagaacccGACCgagGCCGucGUCGGCg -3'
miRNA:   3'- gCGAGC-------------UGGGC-------CUGGa--CGGC--CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 57200 1.11 0.000213
Target:  5'- cCGCUCGACCCGGACCUGCCGGUCGGCg -3'
miRNA:   3'- -GCGAGCUGGGCCUGGACGGCCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.