miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 47726 0.67 0.371802
Target:  5'- gGCUCGccgccuguAUCUGGugCgccGCCGGccgCGGCg -3'
miRNA:   3'- gCGAGC--------UGGGCCugGa--CGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 28083 0.67 0.371802
Target:  5'- gGCUCGACauGGACgaCUGCCGGUa--- -3'
miRNA:   3'- gCGAGCUGggCCUG--GACGGCCAgccg -5'
24093 3' -62.5 NC_005262.1 + 7001 0.67 0.363728
Target:  5'- cCGCUCGACgUCGG-CCUucagGCCGGcCaGCu -3'
miRNA:   3'- -GCGAGCUG-GGCCuGGA----CGGCCaGcCG- -5'
24093 3' -62.5 NC_005262.1 + 51238 0.67 0.358942
Target:  5'- aGCUCGACgagcgccgCCGcGACCUGCCGccgcaacauggaGGCg -3'
miRNA:   3'- gCGAGCUG--------GGC-CUGGACGGCcag---------CCG- -5'
24093 3' -62.5 NC_005262.1 + 9161 0.67 0.355777
Target:  5'- aGUUCGAgCCGGA-CUGCuCGG-CGGa -3'
miRNA:   3'- gCGAGCUgGGCCUgGACG-GCCaGCCg -5'
24093 3' -62.5 NC_005262.1 + 32783 0.68 0.351065
Target:  5'- aGCUCGACaCCGGcgGCgC-GCCGGccaucgcguucgacgUCGGCc -3'
miRNA:   3'- gCGAGCUG-GGCC--UG-GaCGGCC---------------AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 13708 0.68 0.347948
Target:  5'- aGgUCGAagugCCuGACgUGCUGGUCGGUg -3'
miRNA:   3'- gCgAGCUg---GGcCUGgACGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 58916 0.68 0.347948
Target:  5'- gGCcggCGGCCC-GACCgaugGCgcgcgcuucuCGGUCGGCg -3'
miRNA:   3'- gCGa--GCUGGGcCUGGa---CG----------GCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12602 0.68 0.340244
Target:  5'- cCGCgCGGCUccagCGGGCC-GCCGcgucGUCGGCu -3'
miRNA:   3'- -GCGaGCUGG----GCCUGGaCGGC----CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 178 0.68 0.340244
Target:  5'- aGUUCGGCUCGGACggCUucaugguccacGCCGGcgggggCGGCg -3'
miRNA:   3'- gCGAGCUGGGCCUG--GA-----------CGGCCa-----GCCG- -5'
24093 3' -62.5 NC_005262.1 + 4885 0.68 0.332663
Target:  5'- gCGC-CGACUC-GACCUGCU--UCGGCg -3'
miRNA:   3'- -GCGaGCUGGGcCUGGACGGccAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 33150 0.68 0.332663
Target:  5'- cCGCguugucCGACgCGGGCaccuUGCCGagcGUCGGCg -3'
miRNA:   3'- -GCGa-----GCUGgGCCUGg---ACGGC---CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 15742 0.68 0.324469
Target:  5'- uCGCUgaGAacuUCUGGAcgaagcaCCUGCCGGcCGGCg -3'
miRNA:   3'- -GCGAg-CU---GGGCCU-------GGACGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 53239 0.68 0.317877
Target:  5'- aCGCUgCGGCUgcgCGcGGCCgGUCGcGUCGGCa -3'
miRNA:   3'- -GCGA-GCUGG---GC-CUGGaCGGC-CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12312 0.68 0.317877
Target:  5'- cCGCUCGAUCUcguaGGACUgGCCGcccUUGGCg -3'
miRNA:   3'- -GCGAGCUGGG----CCUGGaCGGCc--AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 19012 0.68 0.317877
Target:  5'- aGCUCGucgaGCUCGG-CCUGCCGcGcgcUGGCg -3'
miRNA:   3'- gCGAGC----UGGGCCuGGACGGC-Ca--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 5095 0.68 0.317877
Target:  5'- gGCUCGgcggugcgcGCCCGGuucacgauGCCUGCCaugcgcgacGGgCGGCg -3'
miRNA:   3'- gCGAGC---------UGGGCC--------UGGACGG---------CCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 34622 0.68 0.317877
Target:  5'- aGCUCGGCgaCGGccGCCUGacgcaUGGUCGcGCg -3'
miRNA:   3'- gCGAGCUGg-GCC--UGGACg----GCCAGC-CG- -5'
24093 3' -62.5 NC_005262.1 + 45229 0.68 0.303591
Target:  5'- gGCUCGGCCUGaAC--GCCGGcaacUCGGCg -3'
miRNA:   3'- gCGAGCUGGGCcUGgaCGGCC----AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 51203 0.68 0.303591
Target:  5'- gCGCUC-AUCCGcGacGCCUcGCCGG-CGGCa -3'
miRNA:   3'- -GCGAGcUGGGC-C--UGGA-CGGCCaGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.