Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24093 | 5' | -56.4 | NC_005262.1 | + | 59697 | 0.68 | 0.496802 |
Target: 5'- -gGCGUGCCGCCAcgCGGGcgcuACGu -3' miRNA: 3'- ugCGCGCGGCGGUuaGUCCacu-UGUu -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 45920 | 0.68 | 0.549544 |
Target: 5'- uGCGCGCGCCGaucaAGUCGGGcuacgucgaGGACGg -3' miRNA: 3'- -UGCGCGCGGCgg--UUAGUCCa--------CUUGUu -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 20167 | 0.68 | 0.549544 |
Target: 5'- gACGaaCG-CGCCAGUCAGGaUGGACAGg -3' miRNA: 3'- -UGCgcGCgGCGGUUAGUCC-ACUUGUU- -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 11654 | 0.69 | 0.483456 |
Target: 5'- uUGCGCGCCGCCucccagaacgacagCAGGUaGGGCu- -3' miRNA: 3'- uGCGCGCGGCGGuua-----------GUCCA-CUUGuu -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 32968 | 0.69 | 0.456306 |
Target: 5'- gAUGCGCGUCGCCGAgacgcgcacCGGGUuuGCGAu -3' miRNA: 3'- -UGCGCGCGGCGGUUa--------GUCCAcuUGUU- -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 6576 | 0.69 | 0.455317 |
Target: 5'- gGCGCGCgucgcgauGCCGCCGAccggCAGGUccgggucGAGCGGg -3' miRNA: 3'- -UGCGCG--------CGGCGGUUa---GUCCA-------CUUGUU- -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 14050 | 0.69 | 0.446461 |
Target: 5'- cGCGgGCGCCGCCGgcGUC-GGUGcGGCu- -3' miRNA: 3'- -UGCgCGCGGCGGU--UAGuCCAC-UUGuu -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 62097 | 0.69 | 0.466268 |
Target: 5'- cAUGCGuCGCCGCCGcggcaaccgcGUCGcGGaUGAACGAc -3' miRNA: 3'- -UGCGC-GCGGCGGU----------UAGU-CC-ACUUGUU- -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 11419 | 0.69 | 0.456306 |
Target: 5'- cCGCGCcggGCCGCCGA--AGGUGcGCGAc -3' miRNA: 3'- uGCGCG---CGGCGGUUagUCCACuUGUU- -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 9232 | 0.69 | 0.446461 |
Target: 5'- -gGCGUcgGCCGCCAGUCgugAGG-GGACGAc -3' miRNA: 3'- ugCGCG--CGGCGGUUAG---UCCaCUUGUU- -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 22648 | 0.7 | 0.399091 |
Target: 5'- uGCGCGCGCUGCac----GGUGAACGu -3' miRNA: 3'- -UGCGCGCGGCGguuaguCCACUUGUu -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 39074 | 0.7 | 0.426178 |
Target: 5'- cGCGCGCGCCaGCgCGAUCAgcuccucGGUGGuguccGCGAu -3' miRNA: 3'- -UGCGCGCGG-CG-GUUAGU-------CCACU-----UGUU- -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 22540 | 0.71 | 0.363588 |
Target: 5'- uGCGUGauCGCCGCCG-UCAGGUuguuGAACAu -3' miRNA: 3'- -UGCGC--GCGGCGGUuAGUCCA----CUUGUu -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 3731 | 0.71 | 0.381063 |
Target: 5'- cGCGCGCGgCGUUGcgCAGGaUGAACGc -3' miRNA: 3'- -UGCGCGCgGCGGUuaGUCC-ACUUGUu -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 29722 | 0.71 | 0.346676 |
Target: 5'- cGCGCGCGCggcgUGCCAGUCcGGGUucuggucgucGAGCAAc -3' miRNA: 3'- -UGCGCGCG----GCGGUUAG-UCCA----------CUUGUU- -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 42046 | 0.71 | 0.346676 |
Target: 5'- gACGCGUGCCGCUgcgcGAUCuuccGUGAGCGc -3' miRNA: 3'- -UGCGCGCGGCGG----UUAGuc--CACUUGUu -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 20362 | 0.71 | 0.363588 |
Target: 5'- aGCGCGuCGCCGUCGAUCGGauagacguUGAGCGc -3' miRNA: 3'- -UGCGC-GCGGCGGUUAGUCc-------ACUUGUu -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 39412 | 0.71 | 0.338434 |
Target: 5'- gUGCGCGCCGCCGGUuuggcgucgaCAGGguuGCAGg -3' miRNA: 3'- uGCGCGCGGCGGUUA----------GUCCacuUGUU- -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 13974 | 0.72 | 0.322379 |
Target: 5'- uCGCGCGCUccaucgcgcgGCCGAUCGGGccGGACGGu -3' miRNA: 3'- uGCGCGCGG----------CGGUUAGUCCa-CUUGUU- -5' |
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24093 | 5' | -56.4 | NC_005262.1 | + | 10834 | 0.72 | 0.330335 |
Target: 5'- cAUGCGCGuCCGCCGcgcUCAGG-GGGCGg -3' miRNA: 3'- -UGCGCGC-GGCGGUu--AGUCCaCUUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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