miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 5' -56.4 NC_005262.1 + 12481 0.67 0.614867
Target:  5'- cCGCGCGCggaugCGCCcAUCuGGUcGAGCGg -3'
miRNA:   3'- uGCGCGCG-----GCGGuUAGuCCA-CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 53248 0.67 0.603891
Target:  5'- cUGCGCGCgGCCGGUCGcGUcGGCAu -3'
miRNA:   3'- uGCGCGCGgCGGUUAGUcCAcUUGUu -5'
24093 5' -56.4 NC_005262.1 + 46666 0.67 0.586383
Target:  5'- gACGCGCGCguucuugugguccauCGCCGcgC-GGUGGACc- -3'
miRNA:   3'- -UGCGCGCG---------------GCGGUuaGuCCACUUGuu -5'
24093 5' -56.4 NC_005262.1 + 4876 0.67 0.571142
Target:  5'- aGCGCGCGCCaUCGGUCGGGccgccggccUGAucgcGCAGc -3'
miRNA:   3'- -UGCGCGCGGcGGUUAGUCC---------ACU----UGUU- -5'
24093 5' -56.4 NC_005262.1 + 45629 0.68 0.549544
Target:  5'- -gGgGCGCuCGCgCGAUCAGGcGGGCAc -3'
miRNA:   3'- ugCgCGCG-GCG-GUUAGUCCaCUUGUu -5'
24093 5' -56.4 NC_005262.1 + 22579 0.68 0.528205
Target:  5'- -aGCGUGCCGgCAGUCAuacGGUGcuCGAa -3'
miRNA:   3'- ugCGCGCGGCgGUUAGU---CCACuuGUU- -5'
24093 5' -56.4 NC_005262.1 + 10435 0.68 0.51765
Target:  5'- gGCGCaUGgCGCCGAUCAGGUucGCGc -3'
miRNA:   3'- -UGCGcGCgGCGGUUAGUCCAcuUGUu -5'
24093 5' -56.4 NC_005262.1 + 58731 0.68 0.500942
Target:  5'- cACGCGcCGCCGCCGcgggccugcccgccgAUCAGGcgccggccggcGAGCAAc -3'
miRNA:   3'- -UGCGC-GCGGCGGU---------------UAGUCCa----------CUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 11654 0.69 0.483456
Target:  5'- uUGCGCGCCGCCucccagaacgacagCAGGUaGGGCu- -3'
miRNA:   3'- uGCGCGCGGCGGuua-----------GUCCA-CUUGuu -5'
24093 5' -56.4 NC_005262.1 + 36341 0.66 0.658827
Target:  5'- uGCGUGCGCCGUCAggcuugaucgAUCGGcacGUGGuCAAg -3'
miRNA:   3'- -UGCGCGCGGCGGU----------UAGUC---CACUuGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.