miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 5' -56.4 NC_005262.1 + 10435 0.68 0.51765
Target:  5'- gGCGCaUGgCGCCGAUCAGGUucGCGc -3'
miRNA:   3'- -UGCGcGCgGCGGUUAGUCCAcuUGUu -5'
24093 5' -56.4 NC_005262.1 + 58731 0.68 0.500942
Target:  5'- cACGCGcCGCCGCCGcgggccugcccgccgAUCAGGcgccggccggcGAGCAAc -3'
miRNA:   3'- -UGCGC-GCGGCGGU---------------UAGUCCa----------CUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 59697 0.68 0.496802
Target:  5'- -gGCGUGCCGCCAcgCGGGcgcuACGu -3'
miRNA:   3'- ugCGCGCGGCGGUuaGUCCacu-UGUu -5'
24093 5' -56.4 NC_005262.1 + 11654 0.69 0.483456
Target:  5'- uUGCGCGCCGCCucccagaacgacagCAGGUaGGGCu- -3'
miRNA:   3'- uGCGCGCGGCGGuua-----------GUCCA-CUUGuu -5'
24093 5' -56.4 NC_005262.1 + 62097 0.69 0.466268
Target:  5'- cAUGCGuCGCCGCCGcggcaaccgcGUCGcGGaUGAACGAc -3'
miRNA:   3'- -UGCGC-GCGGCGGU----------UAGU-CC-ACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 32968 0.69 0.456306
Target:  5'- gAUGCGCGUCGCCGAgacgcgcacCGGGUuuGCGAu -3'
miRNA:   3'- -UGCGCGCGGCGGUUa--------GUCCAcuUGUU- -5'
24093 5' -56.4 NC_005262.1 + 11419 0.69 0.456306
Target:  5'- cCGCGCcggGCCGCCGA--AGGUGcGCGAc -3'
miRNA:   3'- uGCGCG---CGGCGGUUagUCCACuUGUU- -5'
24093 5' -56.4 NC_005262.1 + 6576 0.69 0.455317
Target:  5'- gGCGCGCgucgcgauGCCGCCGAccggCAGGUccgggucGAGCGGg -3'
miRNA:   3'- -UGCGCG--------CGGCGGUUa---GUCCA-------CUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 14050 0.69 0.446461
Target:  5'- cGCGgGCGCCGCCGgcGUC-GGUGcGGCu- -3'
miRNA:   3'- -UGCgCGCGGCGGU--UAGuCCAC-UUGuu -5'
24093 5' -56.4 NC_005262.1 + 9232 0.69 0.446461
Target:  5'- -gGCGUcgGCCGCCAGUCgugAGG-GGACGAc -3'
miRNA:   3'- ugCGCG--CGGCGGUUAG---UCCaCUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 39074 0.7 0.426178
Target:  5'- cGCGCGCGCCaGCgCGAUCAgcuccucGGUGGuguccGCGAu -3'
miRNA:   3'- -UGCGCGCGG-CG-GUUAGU-------CCACU-----UGUU- -5'
24093 5' -56.4 NC_005262.1 + 22648 0.7 0.399091
Target:  5'- uGCGCGCGCUGCac----GGUGAACGu -3'
miRNA:   3'- -UGCGCGCGGCGguuaguCCACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 3731 0.71 0.381063
Target:  5'- cGCGCGCGgCGUUGcgCAGGaUGAACGc -3'
miRNA:   3'- -UGCGCGCgGCGGUuaGUCC-ACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 22540 0.71 0.363588
Target:  5'- uGCGUGauCGCCGCCG-UCAGGUuguuGAACAu -3'
miRNA:   3'- -UGCGC--GCGGCGGUuAGUCCA----CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 20362 0.71 0.363588
Target:  5'- aGCGCGuCGCCGUCGAUCGGauagacguUGAGCGc -3'
miRNA:   3'- -UGCGC-GCGGCGGUUAGUCc-------ACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 29722 0.71 0.346676
Target:  5'- cGCGCGCGCggcgUGCCAGUCcGGGUucuggucgucGAGCAAc -3'
miRNA:   3'- -UGCGCGCG----GCGGUUAG-UCCA----------CUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 42046 0.71 0.346676
Target:  5'- gACGCGUGCCGCUgcgcGAUCuuccGUGAGCGc -3'
miRNA:   3'- -UGCGCGCGGCGG----UUAGuc--CACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 39412 0.71 0.338434
Target:  5'- gUGCGCGCCGCCGGUuuggcgucgaCAGGguuGCAGg -3'
miRNA:   3'- uGCGCGCGGCGGUUA----------GUCCacuUGUU- -5'
24093 5' -56.4 NC_005262.1 + 10834 0.72 0.330335
Target:  5'- cAUGCGCGuCCGCCGcgcUCAGG-GGGCGg -3'
miRNA:   3'- -UGCGCGC-GGCGGUu--AGUCCaCUUGUu -5'
24093 5' -56.4 NC_005262.1 + 13974 0.72 0.322379
Target:  5'- uCGCGCGCUccaucgcgcgGCCGAUCGGGccGGACGGu -3'
miRNA:   3'- uGCGCGCGG----------CGGUUAGUCCa-CUUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.