miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 6640 0.66 0.69759
Target:  5'- uGUGCGGCGGcgcuuCGAucGCGUCGCcguccUCGAu -3'
miRNA:   3'- -CACGUCGUCuu---GCU--CGCGGCGu----AGCU- -5'
24094 3' -56.3 NC_005262.1 + 44988 0.66 0.69759
Target:  5'- cGUGCAGCAGucc--GCGCgGCAggCGGc -3'
miRNA:   3'- -CACGUCGUCuugcuCGCGgCGUa-GCU- -5'
24094 3' -56.3 NC_005262.1 + 59179 0.66 0.693288
Target:  5'- -aGCAGCucacgggcccgcuGAugGAGCGCCuuGCgaaGUCGGg -3'
miRNA:   3'- caCGUCGu------------CUugCUCGCGG--CG---UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 33109 0.66 0.686818
Target:  5'- cUGgaGGCGGu-CGAGCGCCGUccagcguccgcuGUCGAu -3'
miRNA:   3'- cACg-UCGUCuuGCUCGCGGCG------------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 42483 0.66 0.69759
Target:  5'- cGUGCGcGUAGGugGGGUuggugagcaGCCGCGagGAa -3'
miRNA:   3'- -CACGU-CGUCUugCUCG---------CGGCGUagCU- -5'
24094 3' -56.3 NC_005262.1 + 16465 0.66 0.69759
Target:  5'- -cGCuGCGucuCGAGCGCCGaAUCGGu -3'
miRNA:   3'- caCGuCGUcuuGCUCGCGGCgUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 22632 0.66 0.69759
Target:  5'- -cGCGGCGGugcccuccuGCGcGCGCUGCA-CGGu -3'
miRNA:   3'- caCGUCGUCu--------UGCuCGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 42239 0.67 0.632394
Target:  5'- -cGCGGUuccGAugcCGAGCGCCGCGcUCa- -3'
miRNA:   3'- caCGUCGu--CUu--GCUCGCGGCGU-AGcu -5'
24094 3' -56.3 NC_005262.1 + 33209 0.67 0.632394
Target:  5'- -cGCAGgAcGACGAGCGCCaCAUUGc -3'
miRNA:   3'- caCGUCgUcUUGCUCGCGGcGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 57224 0.67 0.632394
Target:  5'- -gGCGGCAucGCGAcgcGCGCCGCcaAUCa- -3'
miRNA:   3'- caCGUCGUcuUGCU---CGCGGCG--UAGcu -5'
24094 3' -56.3 NC_005262.1 + 53435 0.67 0.632394
Target:  5'- cGUGCuguuccucCAGaAGCGcGGCGCCGgCGUCGAg -3'
miRNA:   3'- -CACGuc------GUC-UUGC-UCGCGGC-GUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 17124 0.67 0.610553
Target:  5'- -cGCGGCgauggaccacaAGAACGcgcGCGUCGCAaUCGAg -3'
miRNA:   3'- caCGUCG-----------UCUUGCu--CGCGGCGU-AGCU- -5'
24094 3' -56.3 NC_005262.1 + 60989 0.67 0.632394
Target:  5'- -gGC-GCAGGugGAGCGCCugacggacauGCugAUCGAc -3'
miRNA:   3'- caCGuCGUCUugCUCGCGG----------CG--UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 42111 0.67 0.632394
Target:  5'- cGUaCAGCAGcGCG-GCGCCGCcgCu- -3'
miRNA:   3'- -CAcGUCGUCuUGCuCGCGGCGuaGcu -5'
24094 3' -56.3 NC_005262.1 + 39594 0.67 0.621469
Target:  5'- -cGCAGCGucGCG-GCuGCCGCcUCGGg -3'
miRNA:   3'- caCGUCGUcuUGCuCG-CGGCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 52181 0.67 0.621469
Target:  5'- gGUGCagggGGCAGAGCGGGaucguguggaaGUCGC-UCGAg -3'
miRNA:   3'- -CACG----UCGUCUUGCUCg----------CGGCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 9673 0.67 0.621469
Target:  5'- -aGCgAGUAGGcgaGGGCGCCGUcgacGUCGAg -3'
miRNA:   3'- caCG-UCGUCUug-CUCGCGGCG----UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 55747 0.67 0.610553
Target:  5'- -cGCucaccCAGAACGcGCGCUGCGUCa- -3'
miRNA:   3'- caCGuc---GUCUUGCuCGCGGCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 10517 0.67 0.621469
Target:  5'- -aGCAGCAGcGCGGGgGCgGC--CGAa -3'
miRNA:   3'- caCGUCGUCuUGCUCgCGgCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 28619 0.67 0.610553
Target:  5'- -gGCAuGCAGGACGAcgugaacaaGCGCC-UGUCGAa -3'
miRNA:   3'- caCGU-CGUCUUGCU---------CGCGGcGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.