Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24094 | 3' | -56.3 | NC_005262.1 | + | 52181 | 0.67 | 0.621469 |
Target: 5'- gGUGCagggGGCAGAGCGGGaucguguggaaGUCGC-UCGAg -3' miRNA: 3'- -CACG----UCGUCUUGCUCg----------CGGCGuAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 39594 | 0.67 | 0.621469 |
Target: 5'- -cGCAGCGucGCG-GCuGCCGCcUCGGg -3' miRNA: 3'- caCGUCGUcuUGCuCG-CGGCGuAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 42111 | 0.67 | 0.632394 |
Target: 5'- cGUaCAGCAGcGCG-GCGCCGCcgCu- -3' miRNA: 3'- -CAcGUCGUCuUGCuCGCGGCGuaGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 46919 | 0.67 | 0.588785 |
Target: 5'- gGUGCGGCccggcgcgcGGcCGGGCGCCuGCAUCa- -3' miRNA: 3'- -CACGUCGu--------CUuGCUCGCGG-CGUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 60989 | 0.67 | 0.632394 |
Target: 5'- -gGC-GCAGGugGAGCGCCugacggacauGCugAUCGAc -3' miRNA: 3'- caCGuCGUCUugCUCGCGG----------CG--UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 17124 | 0.67 | 0.610553 |
Target: 5'- -cGCGGCgauggaccacaAGAACGcgcGCGUCGCAaUCGAg -3' miRNA: 3'- caCGUCG-----------UCUUGCu--CGCGGCGU-AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 28619 | 0.67 | 0.610553 |
Target: 5'- -gGCAuGCAGGACGAcgugaacaaGCGCC-UGUCGAa -3' miRNA: 3'- caCGU-CGUCUUGCU---------CGCGGcGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 6682 | 0.68 | 0.556422 |
Target: 5'- -aGCGGCGGAACuGGaGCC-CGUCGAc -3' miRNA: 3'- caCGUCGUCUUGcUCgCGGcGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 18494 | 0.68 | 0.53513 |
Target: 5'- uGUGCAGCuuuccguacAGAAgcCGAGCGCgcaGCAccUCGAa -3' miRNA: 3'- -CACGUCG---------UCUU--GCUCGCGg--CGU--AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 23009 | 0.68 | 0.556422 |
Target: 5'- cGUGCGGCAuGAAUGcGGCuuCCGCGUgGAg -3' miRNA: 3'- -CACGUCGU-CUUGC-UCGc-GGCGUAgCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 46659 | 0.68 | 0.56716 |
Target: 5'- -aGCGGCAGcAUG-GCGCCgGCAcCGAc -3' miRNA: 3'- caCGUCGUCuUGCuCGCGG-CGUaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 5271 | 0.68 | 0.56716 |
Target: 5'- cGUGCAGCAGcACGGGCaggGCgGUCGAc -3' miRNA: 3'- -CACGUCGUCuUGCUCGcggCG-UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 46794 | 0.68 | 0.556422 |
Target: 5'- --uCAGCAcGACGAGCGCgCGC-UCGGc -3' miRNA: 3'- cacGUCGUcUUGCUCGCG-GCGuAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 58132 | 0.68 | 0.545743 |
Target: 5'- gGUGCAGUAccucccGAugGuGCGCgGCAUCc- -3' miRNA: 3'- -CACGUCGU------CUugCuCGCGgCGUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 51342 | 0.68 | 0.576869 |
Target: 5'- cGUG-AGCgacgucucgacgaGGAuCGuGCGCCGCAUCGGc -3' miRNA: 3'- -CACgUCG-------------UCUuGCuCGCGGCGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 13540 | 0.68 | 0.524591 |
Target: 5'- uGUGCAGCGGcauCGAG-GCCGCGa--- -3' miRNA: 3'- -CACGUCGUCuu-GCUCgCGGCGUagcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 4872 | 0.69 | 0.514132 |
Target: 5'- -cGCAGCuugcCGAGCGCCGacUCGAc -3' miRNA: 3'- caCGUCGucuuGCUCGCGGCguAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 2766 | 0.69 | 0.493479 |
Target: 5'- -aGCA-CGGcGGCGGGUGCCGCAUCc- -3' miRNA: 3'- caCGUcGUC-UUGCUCGCGGCGUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 12552 | 0.69 | 0.483295 |
Target: 5'- -gGCGGCAGGucGCG-GCGgCGCucGUCGAg -3' miRNA: 3'- caCGUCGUCU--UGCuCGCgGCG--UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 50417 | 0.69 | 0.473213 |
Target: 5'- -cGCcGCGGAgcGCGAGgGCCGCGUg-- -3' miRNA: 3'- caCGuCGUCU--UGCUCgCGGCGUAgcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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