miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 17606 0.71 0.361595
Target:  5'- -aGCGcGCGGAGCugGAGCGCCaGCAgcgCGAg -3'
miRNA:   3'- caCGU-CGUCUUG--CUCGCGG-CGUa--GCU- -5'
24094 3' -56.3 NC_005262.1 + 52650 0.71 0.361595
Target:  5'- -cGCagAGCAGAACGuGCGCauCGUCGAg -3'
miRNA:   3'- caCG--UCGUCUUGCuCGCGgcGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 39914 0.71 0.370174
Target:  5'- cGUGCGGguGAcacaauACGuguGCGCCGCG-CGGg -3'
miRNA:   3'- -CACGUCguCU------UGCu--CGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 49150 0.71 0.378892
Target:  5'- -gGCAcGguGGGCGuGCagGCCGCAUCGGc -3'
miRNA:   3'- caCGU-CguCUUGCuCG--CGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 61076 0.72 0.336697
Target:  5'- -gGC-GCAGGGCGAGCGCuacCGCAaCGAc -3'
miRNA:   3'- caCGuCGUCUUGCUCGCG---GCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 17210 0.72 0.328679
Target:  5'- cUGCGGCgAGGACG-GCGCUgGCGUCGu -3'
miRNA:   3'- cACGUCG-UCUUGCuCGCGG-CGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 47917 0.72 0.320804
Target:  5'- -cGCGGCGGAuc-AGCGCCaucGCGUCGAg -3'
miRNA:   3'- caCGUCGUCUugcUCGCGG---CGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 43790 0.72 0.343212
Target:  5'- aGUGCAGCAGAugcaggagcuuuCGGGCGaUCGCggCGAc -3'
miRNA:   3'- -CACGUCGUCUu-----------GCUCGC-GGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 18643 0.72 0.328679
Target:  5'- -cGCAcGCAGcGCGAGCGCCuuGUCGc -3'
miRNA:   3'- caCGU-CGUCuUGCUCGCGGcgUAGCu -5'
24094 3' -56.3 NC_005262.1 + 42952 0.73 0.290724
Target:  5'- cUGCGucguGUAGAGCGGGUGCCGCGccccgCGAu -3'
miRNA:   3'- cACGU----CGUCUUGCUCGCGGCGUa----GCU- -5'
24094 3' -56.3 NC_005262.1 + 14029 0.73 0.316148
Target:  5'- -gGCAGCGGccggagccucgggcGCGGGCGCCGCcggcGUCGGu -3'
miRNA:   3'- caCGUCGUCu-------------UGCUCGCGGCG----UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 52148 0.73 0.276532
Target:  5'- cGUGCAGCGcGACGccGGCGCCGC--CGAg -3'
miRNA:   3'- -CACGUCGUcUUGC--UCGCGGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 15611 0.73 0.304729
Target:  5'- cGUGCGGCAgGAGCGcaucgaGGCGCggcugaaCGCGUCGGg -3'
miRNA:   3'- -CACGUCGU-CUUGC------UCGCG-------GCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 41618 0.73 0.313071
Target:  5'- -gGCAGCGGAACGGuGaCGCCGUacaaugguGUCGGu -3'
miRNA:   3'- caCGUCGUCUUGCU-C-GCGGCG--------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 28405 0.74 0.269646
Target:  5'- cGUGCGcGCGGuauUGAGCGCCGCGUgCGc -3'
miRNA:   3'- -CACGU-CGUCuu-GCUCGCGGCGUA-GCu -5'
24094 3' -56.3 NC_005262.1 + 37715 0.74 0.249816
Target:  5'- -gGCGuGCAGAugGGGCGUgaagggcugCGCGUCGAa -3'
miRNA:   3'- caCGU-CGUCUugCUCGCG---------GCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 1519 0.74 0.256289
Target:  5'- cUGCGGCGGAACGuauugcgugaacAGCGCCaGCGUUGc -3'
miRNA:   3'- cACGUCGUCUUGC------------UCGCGG-CGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 12605 0.74 0.243479
Target:  5'- -cGCGGCuccAGCGGGcCGCCGCGUCGu -3'
miRNA:   3'- caCGUCGuc-UUGCUC-GCGGCGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 49221 0.74 0.249816
Target:  5'- gGUGCGGUGcGcgUGAGCGCCGCggCGAg -3'
miRNA:   3'- -CACGUCGU-CuuGCUCGCGGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 32867 0.76 0.182297
Target:  5'- cGUGCGGCGccGAGCuGuuCGCCGCGUCGAa -3'
miRNA:   3'- -CACGUCGU--CUUG-CucGCGGCGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.