Results 101 - 107 of 107 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24094 | 3' | -56.3 | NC_005262.1 | + | 32867 | 0.76 | 0.182297 |
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Target: 5'- cGUGCGGCGccGAGCuGuuCGCCGCGUCGAa -3' miRNA: 3'- -CACGUCGU--CUUG-CucGCGGCGUAGCU- -5' |
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| 24094 | 3' | -56.3 | NC_005262.1 | + | 48292 | 0.79 | 0.111225 |
|
Target: 5'- uGUGCAGCucgccgguGAGCGAGcCGCCGCGcUCGGu -3' miRNA: 3'- -CACGUCGu-------CUUGCUC-GCGGCGU-AGCU- -5' |
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| 24094 | 3' | -56.3 | NC_005262.1 | + | 28838 | 0.8 | 0.096644 |
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Target: 5'- uUGCGGC----CGAGCGCCGCGUCGAa -3' miRNA: 3'- cACGUCGucuuGCUCGCGGCGUAGCU- -5' |
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| 24094 | 3' | -56.3 | NC_005262.1 | + | 1743 | 0.84 | 0.050035 |
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Target: 5'- uGUGCAGgAG-GCGAuGCGCCGCAUCGAg -3' miRNA: 3'- -CACGUCgUCuUGCU-CGCGGCGUAGCU- -5' |
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| 24094 | 3' | -56.3 | NC_005262.1 | + | 51232 | 0.87 | 0.03141 |
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Target: 5'- -aGCAGCAGcucGACGAGCGCCGCcgCGAc -3' miRNA: 3'- caCGUCGUC---UUGCUCGCGGCGuaGCU- -5' |
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| 24094 | 3' | -56.3 | NC_005262.1 | + | 55390 | 0.9 | 0.019077 |
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Target: 5'- -cGCaAGCAGAuCGAGCGCCGCAUCGAg -3' miRNA: 3'- caCG-UCGUCUuGCUCGCGGCGUAGCU- -5' |
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| 24094 | 3' | -56.3 | NC_005262.1 | + | 57295 | 1.09 | 0.000826 |
|
Target: 5'- cGUGCAGCAGAACGAGCGCCGCAUCGAg -3' miRNA: 3'- -CACGUCGUCUUGCUCGCGGCGUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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