Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24094 | 3' | -56.3 | NC_005262.1 | + | 18643 | 0.72 | 0.328679 |
Target: 5'- -cGCAcGCAGcGCGAGCGCCuuGUCGc -3' miRNA: 3'- caCGU-CGUCuUGCUCGCGGcgUAGCu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 61076 | 0.72 | 0.336697 |
Target: 5'- -gGC-GCAGGGCGAGCGCuacCGCAaCGAc -3' miRNA: 3'- caCGuCGUCUUGCUCGCG---GCGUaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 43790 | 0.72 | 0.343212 |
Target: 5'- aGUGCAGCAGAugcaggagcuuuCGGGCGaUCGCggCGAc -3' miRNA: 3'- -CACGUCGUCUu-----------GCUCGC-GGCGuaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 17606 | 0.71 | 0.361595 |
Target: 5'- -aGCGcGCGGAGCugGAGCGCCaGCAgcgCGAg -3' miRNA: 3'- caCGU-CGUCUUG--CUCGCGG-CGUa--GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 30929 | 0.71 | 0.361595 |
Target: 5'- -cGCGGC-GAACGcucGGCGCCGCAcgugCGGg -3' miRNA: 3'- caCGUCGuCUUGC---UCGCGGCGUa---GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 43277 | 0.71 | 0.378892 |
Target: 5'- aGUGgGGUgAGGucgucGCGAGCGCCGCGcCGAu -3' miRNA: 3'- -CACgUCG-UCU-----UGCUCGCGGCGUaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 52650 | 0.71 | 0.361595 |
Target: 5'- -cGCagAGCAGAACGuGCGCauCGUCGAg -3' miRNA: 3'- caCG--UCGUCUUGCuCGCGgcGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 39914 | 0.71 | 0.370174 |
Target: 5'- cGUGCGGguGAcacaauACGuguGCGCCGCG-CGGg -3' miRNA: 3'- -CACGUCguCU------UGCu--CGCGGCGUaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 49150 | 0.71 | 0.378892 |
Target: 5'- -gGCAcGguGGGCGuGCagGCCGCAUCGGc -3' miRNA: 3'- caCGU-CguCUUGCuCG--CGGCGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 46695 | 0.7 | 0.452395 |
Target: 5'- -cGCGGUGGAccuccucGCGGccCGCCGCGUCGAc -3' miRNA: 3'- caCGUCGUCU-------UGCUc-GCGGCGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 39502 | 0.7 | 0.453375 |
Target: 5'- -aGCAuCAGGgcgGCGAGCGUCGCGcCGAu -3' miRNA: 3'- caCGUcGUCU---UGCUCGCGGCGUaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 53700 | 0.7 | 0.453375 |
Target: 5'- -gGCGcGCAGAACccG-GCCGCGUCGAa -3' miRNA: 3'- caCGU-CGUCUUGcuCgCGGCGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 47915 | 0.7 | 0.433998 |
Target: 5'- uUGUuuuuGCAGAcgcCGAGCGCCGgcgaCAUCGAa -3' miRNA: 3'- cACGu---CGUCUu--GCUCGCGGC----GUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 21548 | 0.7 | 0.443627 |
Target: 5'- -cGCAGU-GAGCGcGGCGCUcgGCAUCGGa -3' miRNA: 3'- caCGUCGuCUUGC-UCGCGG--CGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 15913 | 0.7 | 0.433998 |
Target: 5'- -cGUGGCGccGCGAuGCGCCGCAgagCGAg -3' miRNA: 3'- caCGUCGUcuUGCU-CGCGGCGUa--GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 26845 | 0.7 | 0.424491 |
Target: 5'- -aGCAGCGGcGCGAGCGUgGUGaucUCGGc -3' miRNA: 3'- caCGUCGUCuUGCUCGCGgCGU---AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 50339 | 0.7 | 0.424491 |
Target: 5'- -cGC-GCAGGACGaAGCGCCcGCGaCGAc -3' miRNA: 3'- caCGuCGUCUUGC-UCGCGG-CGUaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 34027 | 0.7 | 0.424491 |
Target: 5'- -gGCcGCAu--CGuGCGCCGCGUCGAu -3' miRNA: 3'- caCGuCGUcuuGCuCGCGGCGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 6446 | 0.7 | 0.41511 |
Target: 5'- cGUGUAGUucGGcuccGGCGAGaCGCCGgCAUCGAc -3' miRNA: 3'- -CACGUCG--UC----UUGCUC-GCGGC-GUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 23665 | 0.7 | 0.443627 |
Target: 5'- uUGCAGC---GCGAGCGUCGUAcuuUCGGg -3' miRNA: 3'- cACGUCGucuUGCUCGCGGCGU---AGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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