Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24094 | 3' | -56.3 | NC_005262.1 | + | 18877 | 0.66 | 0.64332 |
Target: 5'- -cGgAGCAGcGCcuuGCGCCGCAUCc- -3' miRNA: 3'- caCgUCGUCuUGcu-CGCGGCGUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 21771 | 0.66 | 0.64332 |
Target: 5'- uUGCGGUacGGggUGAG-GCCGCccgauUCGAg -3' miRNA: 3'- cACGUCG--UCuuGCUCgCGGCGu----AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 29152 | 0.66 | 0.64332 |
Target: 5'- -aGcCAGUcGAGCGA-CGCCGgGUCGAg -3' miRNA: 3'- caC-GUCGuCUUGCUcGCGGCgUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 10427 | 0.66 | 0.64332 |
Target: 5'- cUGCGGCAG-GCGcauGGCGCCG-AUCa- -3' miRNA: 3'- cACGUCGUCuUGC---UCGCGGCgUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 40073 | 0.66 | 0.64332 |
Target: 5'- -gGUcaaAGCAGggUGAuCGCCGCgugGUCGAc -3' miRNA: 3'- caCG---UCGUCuuGCUcGCGGCG---UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 9174 | 0.66 | 0.650962 |
Target: 5'- cUGCucGGCGGAccACGAGCcgaGCCGCgaguuguagcugacGUCGAu -3' miRNA: 3'- cACG--UCGUCU--UGCUCG---CGGCG--------------UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 40307 | 0.66 | 0.654235 |
Target: 5'- -cGCAGCAGuucAACcccGGCGaCCGCuUCGAg -3' miRNA: 3'- caCGUCGUC---UUGc--UCGC-GGCGuAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 41208 | 0.66 | 0.654235 |
Target: 5'- aUGUAGUuGAGC-AGCGCCGCGcaugCGGc -3' miRNA: 3'- cACGUCGuCUUGcUCGCGGCGUa---GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 28991 | 0.66 | 0.654235 |
Target: 5'- -aGCAGCAcGGCGAGaaggagcucaGCCuCAUCGAg -3' miRNA: 3'- caCGUCGUcUUGCUCg---------CGGcGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 3824 | 0.66 | 0.658596 |
Target: 5'- gGUGCaugcgcgccugaucgAGCGGGcgaaucugcuucGCGAGCGCCuCGUCGu -3' miRNA: 3'- -CACG---------------UCGUCU------------UGCUCGCGGcGUAGCu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 5190 | 0.66 | 0.66513 |
Target: 5'- gGUGCAGCGcauCGAgGCGCCcCAUCa- -3' miRNA: 3'- -CACGUCGUcuuGCU-CGCGGcGUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 52200 | 0.66 | 0.66513 |
Target: 5'- cGUGCAGgAGu-CGaAGCGCCuGCA-CGAc -3' miRNA: 3'- -CACGUCgUCuuGC-UCGCGG-CGUaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 12814 | 0.66 | 0.66513 |
Target: 5'- -cGCAGCcggcgcgugaAGAAgGAGCGCgGCcUCGc -3' miRNA: 3'- caCGUCG----------UCUUgCUCGCGgCGuAGCu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 14243 | 0.66 | 0.66513 |
Target: 5'- -cGCacgAGCAGGACGcAGCGUCGC--CGGa -3' miRNA: 3'- caCG---UCGUCUUGC-UCGCGGCGuaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 23414 | 0.66 | 0.66513 |
Target: 5'- aUGCGGCGGGcagcAUGAGC-CgCGuCAUCGAg -3' miRNA: 3'- cACGUCGUCU----UGCUCGcG-GC-GUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 29453 | 0.66 | 0.66513 |
Target: 5'- cUGCGGCAGAgGCGcaGGuCGCCGaggCGAa -3' miRNA: 3'- cACGUCGUCU-UGC--UC-GCGGCguaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 63235 | 0.66 | 0.675994 |
Target: 5'- -aGCGGUuGGGCGAGCGgUCGCGcaCGAa -3' miRNA: 3'- caCGUCGuCUUGCUCGC-GGCGUa-GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 12331 | 0.66 | 0.686818 |
Target: 5'- cGUGCcGCAGcGCGcGGCGgCaGCAUUGAa -3' miRNA: 3'- -CACGuCGUCuUGC-UCGCgG-CGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 30886 | 0.66 | 0.686818 |
Target: 5'- -aGCGGcCGGAugGuGaCGCCGCucgcgcUCGAg -3' miRNA: 3'- caCGUC-GUCUugCuC-GCGGCGu-----AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 58208 | 0.66 | 0.686818 |
Target: 5'- cUGCGG-AGAGCG-GCGCCGCccguaccaCGAa -3' miRNA: 3'- cACGUCgUCUUGCuCGCGGCGua------GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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