miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 58657 0.69 0.493479
Target:  5'- -cGCcgAGCAGGAUcAGCGCCGCccGUCGc -3'
miRNA:   3'- caCG--UCGUCUUGcUCGCGGCG--UAGCu -5'
24094 3' -56.3 NC_005262.1 + 16584 0.69 0.493479
Target:  5'- cUGCGGCGGcGAC-AGUGCCGCGagccccauuUCGAg -3'
miRNA:   3'- cACGUCGUC-UUGcUCGCGGCGU---------AGCU- -5'
24094 3' -56.3 NC_005262.1 + 12552 0.69 0.483295
Target:  5'- -gGCGGCAGGucGCG-GCGgCGCucGUCGAg -3'
miRNA:   3'- caCGUCGUCU--UGCuCGCgGCG--UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 50417 0.69 0.473213
Target:  5'- -cGCcGCGGAgcGCGAGgGCCGCGUg-- -3'
miRNA:   3'- caCGuCGUCU--UGCUCgCGGCGUAgcu -5'
24094 3' -56.3 NC_005262.1 + 22800 0.69 0.473213
Target:  5'- gGUGCcauCAGcAGCGAGCGCCGCcgCc- -3'
miRNA:   3'- -CACGuc-GUC-UUGCUCGCGGCGuaGcu -5'
24094 3' -56.3 NC_005262.1 + 29387 0.69 0.473213
Target:  5'- -aGCAGCAGuacAACGAcGCGCuCGCgAUCGc -3'
miRNA:   3'- caCGUCGUC---UUGCU-CGCG-GCG-UAGCu -5'
24094 3' -56.3 NC_005262.1 + 51123 0.69 0.463238
Target:  5'- --aCGGCAGAACGGGCGCagGguUCGc -3'
miRNA:   3'- cacGUCGUCUUGCUCGCGg-CguAGCu -5'
24094 3' -56.3 NC_005262.1 + 39502 0.7 0.453375
Target:  5'- -aGCAuCAGGgcgGCGAGCGUCGCGcCGAu -3'
miRNA:   3'- caCGUcGUCU---UGCUCGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 53700 0.7 0.453375
Target:  5'- -gGCGcGCAGAACccG-GCCGCGUCGAa -3'
miRNA:   3'- caCGU-CGUCUUGcuCgCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 46695 0.7 0.452395
Target:  5'- -cGCGGUGGAccuccucGCGGccCGCCGCGUCGAc -3'
miRNA:   3'- caCGUCGUCU-------UGCUc-GCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 23665 0.7 0.443627
Target:  5'- uUGCAGC---GCGAGCGUCGUAcuuUCGGg -3'
miRNA:   3'- cACGUCGucuUGCUCGCGGCGU---AGCU- -5'
24094 3' -56.3 NC_005262.1 + 21548 0.7 0.443627
Target:  5'- -cGCAGU-GAGCGcGGCGCUcgGCAUCGGa -3'
miRNA:   3'- caCGUCGuCUUGC-UCGCGG--CGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 15913 0.7 0.433998
Target:  5'- -cGUGGCGccGCGAuGCGCCGCAgagCGAg -3'
miRNA:   3'- caCGUCGUcuUGCU-CGCGGCGUa--GCU- -5'
24094 3' -56.3 NC_005262.1 + 47915 0.7 0.433998
Target:  5'- uUGUuuuuGCAGAcgcCGAGCGCCGgcgaCAUCGAa -3'
miRNA:   3'- cACGu---CGUCUu--GCUCGCGGC----GUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 26845 0.7 0.424491
Target:  5'- -aGCAGCGGcGCGAGCGUgGUGaucUCGGc -3'
miRNA:   3'- caCGUCGUCuUGCUCGCGgCGU---AGCU- -5'
24094 3' -56.3 NC_005262.1 + 50339 0.7 0.424491
Target:  5'- -cGC-GCAGGACGaAGCGCCcGCGaCGAc -3'
miRNA:   3'- caCGuCGUCUUGC-UCGCGG-CGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 34027 0.7 0.424491
Target:  5'- -gGCcGCAu--CGuGCGCCGCGUCGAu -3'
miRNA:   3'- caCGuCGUcuuGCuCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 6446 0.7 0.41511
Target:  5'- cGUGUAGUucGGcuccGGCGAGaCGCCGgCAUCGAc -3'
miRNA:   3'- -CACGUCG--UC----UUGCUC-GCGGC-GUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 49150 0.71 0.378892
Target:  5'- -gGCAcGguGGGCGuGCagGCCGCAUCGGc -3'
miRNA:   3'- caCGU-CguCUUGCuCG--CGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 43277 0.71 0.378892
Target:  5'- aGUGgGGUgAGGucgucGCGAGCGCCGCGcCGAu -3'
miRNA:   3'- -CACgUCG-UCU-----UGCUCGCGGCGUaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.