miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 40307 0.66 0.654235
Target:  5'- -cGCAGCAGuucAACcccGGCGaCCGCuUCGAg -3'
miRNA:   3'- caCGUCGUC---UUGc--UCGC-GGCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 41208 0.66 0.654235
Target:  5'- aUGUAGUuGAGC-AGCGCCGCGcaugCGGc -3'
miRNA:   3'- cACGUCGuCUUGcUCGCGGCGUa---GCU- -5'
24094 3' -56.3 NC_005262.1 + 41618 0.73 0.313071
Target:  5'- -gGCAGCGGAACGGuGaCGCCGUacaaugguGUCGGu -3'
miRNA:   3'- caCGUCGUCUUGCU-C-GCGGCG--------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 42111 0.67 0.632394
Target:  5'- cGUaCAGCAGcGCG-GCGCCGCcgCu- -3'
miRNA:   3'- -CAcGUCGUCuUGCuCGCGGCGuaGcu -5'
24094 3' -56.3 NC_005262.1 + 42239 0.67 0.632394
Target:  5'- -cGCGGUuccGAugcCGAGCGCCGCGcUCa- -3'
miRNA:   3'- caCGUCGu--CUu--GCUCGCGGCGU-AGcu -5'
24094 3' -56.3 NC_005262.1 + 42483 0.66 0.69759
Target:  5'- cGUGCGcGUAGGugGGGUuggugagcaGCCGCGagGAa -3'
miRNA:   3'- -CACGU-CGUCUugCUCG---------CGGCGUagCU- -5'
24094 3' -56.3 NC_005262.1 + 42952 0.73 0.290724
Target:  5'- cUGCGucguGUAGAGCGGGUGCCGCGccccgCGAu -3'
miRNA:   3'- cACGU----CGUCUUGCUCGCGGCGUa----GCU- -5'
24094 3' -56.3 NC_005262.1 + 43277 0.71 0.378892
Target:  5'- aGUGgGGUgAGGucgucGCGAGCGCCGCGcCGAu -3'
miRNA:   3'- -CACgUCG-UCU-----UGCUCGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 43790 0.72 0.343212
Target:  5'- aGUGCAGCAGAugcaggagcuuuCGGGCGaUCGCggCGAc -3'
miRNA:   3'- -CACGUCGUCUu-----------GCUCGC-GGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 44988 0.66 0.69759
Target:  5'- cGUGCAGCAGucc--GCGCgGCAggCGGc -3'
miRNA:   3'- -CACGUCGUCuugcuCGCGgCGUa-GCU- -5'
24094 3' -56.3 NC_005262.1 + 45806 0.67 0.610553
Target:  5'- -gGCAGCcacgucgaAGAACGugcgcacuuccGGCGCUGCGUcCGAu -3'
miRNA:   3'- caCGUCG--------UCUUGC-----------UCGCGGCGUA-GCU- -5'
24094 3' -56.3 NC_005262.1 + 46659 0.68 0.56716
Target:  5'- -aGCGGCAGcAUG-GCGCCgGCAcCGAc -3'
miRNA:   3'- caCGUCGUCuUGCuCGCGG-CGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 46695 0.7 0.452395
Target:  5'- -cGCGGUGGAccuccucGCGGccCGCCGCGUCGAc -3'
miRNA:   3'- caCGUCGUCU-------UGCUc-GCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 46794 0.68 0.556422
Target:  5'- --uCAGCAcGACGAGCGCgCGC-UCGGc -3'
miRNA:   3'- cacGUCGUcUUGCUCGCG-GCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 46919 0.67 0.588785
Target:  5'- gGUGCGGCccggcgcgcGGcCGGGCGCCuGCAUCa- -3'
miRNA:   3'- -CACGUCGu--------CUuGCUCGCGG-CGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 47915 0.7 0.433998
Target:  5'- uUGUuuuuGCAGAcgcCGAGCGCCGgcgaCAUCGAa -3'
miRNA:   3'- cACGu---CGUCUu--GCUCGCGGC----GUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 47917 0.72 0.320804
Target:  5'- -cGCGGCGGAuc-AGCGCCaucGCGUCGAg -3'
miRNA:   3'- caCGUCGUCUugcUCGCGG---CGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 48292 0.79 0.111225
Target:  5'- uGUGCAGCucgccgguGAGCGAGcCGCCGCGcUCGGu -3'
miRNA:   3'- -CACGUCGu-------CUUGCUC-GCGGCGU-AGCU- -5'
24094 3' -56.3 NC_005262.1 + 49150 0.71 0.378892
Target:  5'- -gGCAcGguGGGCGuGCagGCCGCAUCGGc -3'
miRNA:   3'- caCGU-CguCUUGCuCG--CGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 49221 0.74 0.249816
Target:  5'- gGUGCGGUGcGcgUGAGCGCCGCggCGAg -3'
miRNA:   3'- -CACGUCGU-CuuGCUCGCGGCGuaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.