miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 50339 0.7 0.424491
Target:  5'- -cGC-GCAGGACGaAGCGCCcGCGaCGAc -3'
miRNA:   3'- caCGuCGUCUUGC-UCGCGG-CGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 50417 0.69 0.473213
Target:  5'- -cGCcGCGGAgcGCGAGgGCCGCGUg-- -3'
miRNA:   3'- caCGuCGUCU--UGCUCgCGGCGUAgcu -5'
24094 3' -56.3 NC_005262.1 + 51123 0.69 0.463238
Target:  5'- --aCGGCAGAACGGGCGCagGguUCGc -3'
miRNA:   3'- cacGUCGUCUUGCUCGCGg-CguAGCu -5'
24094 3' -56.3 NC_005262.1 + 51232 0.87 0.03141
Target:  5'- -aGCAGCAGcucGACGAGCGCCGCcgCGAc -3'
miRNA:   3'- caCGUCGUC---UUGCUCGCGGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 51342 0.68 0.576869
Target:  5'- cGUG-AGCgacgucucgacgaGGAuCGuGCGCCGCAUCGGc -3'
miRNA:   3'- -CACgUCG-------------UCUuGCuCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 52148 0.73 0.276532
Target:  5'- cGUGCAGCGcGACGccGGCGCCGC--CGAg -3'
miRNA:   3'- -CACGUCGUcUUGC--UCGCGGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 52181 0.67 0.621469
Target:  5'- gGUGCagggGGCAGAGCGGGaucguguggaaGUCGC-UCGAg -3'
miRNA:   3'- -CACG----UCGUCUUGCUCg----------CGGCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 52200 0.66 0.66513
Target:  5'- cGUGCAGgAGu-CGaAGCGCCuGCA-CGAc -3'
miRNA:   3'- -CACGUCgUCuuGC-UCGCGG-CGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 52344 0.67 0.610553
Target:  5'- -cGCGGUAGGcacgaugcGCGGGCGCgGCGugUCGc -3'
miRNA:   3'- caCGUCGUCU--------UGCUCGCGgCGU--AGCu -5'
24094 3' -56.3 NC_005262.1 + 52555 0.67 0.588785
Target:  5'- gGUGC-GCAGcGCGAuCGUCGCuGUCGAg -3'
miRNA:   3'- -CACGuCGUCuUGCUcGCGGCG-UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 52650 0.71 0.361595
Target:  5'- -cGCagAGCAGAACGuGCGCauCGUCGAg -3'
miRNA:   3'- caCG--UCGUCUUGCuCGCGgcGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 53435 0.67 0.632394
Target:  5'- cGUGCuguuccucCAGaAGCGcGGCGCCGgCGUCGAg -3'
miRNA:   3'- -CACGuc------GUC-UUGC-UCGCGGC-GUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 53700 0.7 0.453375
Target:  5'- -gGCGcGCAGAACccG-GCCGCGUCGAa -3'
miRNA:   3'- caCGU-CGUCUUGcuCgCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 55390 0.9 0.019077
Target:  5'- -cGCaAGCAGAuCGAGCGCCGCAUCGAg -3'
miRNA:   3'- caCG-UCGUCUuGCUCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 55747 0.67 0.610553
Target:  5'- -cGCucaccCAGAACGcGCGCUGCGUCa- -3'
miRNA:   3'- caCGuc---GUCUUGCuCGCGGCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 57224 0.67 0.632394
Target:  5'- -gGCGGCAucGCGAcgcGCGCCGCcaAUCa- -3'
miRNA:   3'- caCGUCGUcuUGCU---CGCGGCG--UAGcu -5'
24094 3' -56.3 NC_005262.1 + 57295 1.09 0.000826
Target:  5'- cGUGCAGCAGAACGAGCGCCGCAUCGAg -3'
miRNA:   3'- -CACGUCGUCUUGCUCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 58132 0.68 0.545743
Target:  5'- gGUGCAGUAccucccGAugGuGCGCgGCAUCc- -3'
miRNA:   3'- -CACGUCGU------CUugCuCGCGgCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 58208 0.66 0.686818
Target:  5'- cUGCGG-AGAGCG-GCGCCGCccguaccaCGAa -3'
miRNA:   3'- cACGUCgUCUUGCuCGCGGCGua------GCU- -5'
24094 3' -56.3 NC_005262.1 + 58657 0.69 0.493479
Target:  5'- -cGCcgAGCAGGAUcAGCGCCGCccGUCGc -3'
miRNA:   3'- caCG--UCGUCUUGcUCGCGGCG--UAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.