miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 42952 0.73 0.290724
Target:  5'- cUGCGucguGUAGAGCGGGUGCCGCGccccgCGAu -3'
miRNA:   3'- cACGU----CGUCUUGCUCGCGGCGUa----GCU- -5'
24094 3' -56.3 NC_005262.1 + 42483 0.66 0.69759
Target:  5'- cGUGCGcGUAGGugGGGUuggugagcaGCCGCGagGAa -3'
miRNA:   3'- -CACGU-CGUCUugCUCG---------CGGCGUagCU- -5'
24094 3' -56.3 NC_005262.1 + 42239 0.67 0.632394
Target:  5'- -cGCGGUuccGAugcCGAGCGCCGCGcUCa- -3'
miRNA:   3'- caCGUCGu--CUu--GCUCGCGGCGU-AGcu -5'
24094 3' -56.3 NC_005262.1 + 42111 0.67 0.632394
Target:  5'- cGUaCAGCAGcGCG-GCGCCGCcgCu- -3'
miRNA:   3'- -CAcGUCGUCuUGCuCGCGGCGuaGcu -5'
24094 3' -56.3 NC_005262.1 + 41618 0.73 0.313071
Target:  5'- -gGCAGCGGAACGGuGaCGCCGUacaaugguGUCGGu -3'
miRNA:   3'- caCGUCGUCUUGCU-C-GCGGCG--------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 41208 0.66 0.654235
Target:  5'- aUGUAGUuGAGC-AGCGCCGCGcaugCGGc -3'
miRNA:   3'- cACGUCGuCUUGcUCGCGGCGUa---GCU- -5'
24094 3' -56.3 NC_005262.1 + 40307 0.66 0.654235
Target:  5'- -cGCAGCAGuucAACcccGGCGaCCGCuUCGAg -3'
miRNA:   3'- caCGUCGUC---UUGc--UCGC-GGCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 40073 0.66 0.64332
Target:  5'- -gGUcaaAGCAGggUGAuCGCCGCgugGUCGAc -3'
miRNA:   3'- caCG---UCGUCuuGCUcGCGGCG---UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 39914 0.71 0.370174
Target:  5'- cGUGCGGguGAcacaauACGuguGCGCCGCG-CGGg -3'
miRNA:   3'- -CACGUCguCU------UGCu--CGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 39594 0.67 0.621469
Target:  5'- -cGCAGCGucGCG-GCuGCCGCcUCGGg -3'
miRNA:   3'- caCGUCGUcuUGCuCG-CGGCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 39502 0.7 0.453375
Target:  5'- -aGCAuCAGGgcgGCGAGCGUCGCGcCGAu -3'
miRNA:   3'- caCGUcGUCU---UGCUCGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 37715 0.74 0.249816
Target:  5'- -gGCGuGCAGAugGGGCGUgaagggcugCGCGUCGAa -3'
miRNA:   3'- caCGU-CGUCUugCUCGCG---------GCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 34027 0.7 0.424491
Target:  5'- -gGCcGCAu--CGuGCGCCGCGUCGAu -3'
miRNA:   3'- caCGuCGUcuuGCuCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 33209 0.67 0.632394
Target:  5'- -cGCAGgAcGACGAGCGCCaCAUUGc -3'
miRNA:   3'- caCGUCgUcUUGCUCGCGGcGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 33109 0.66 0.686818
Target:  5'- cUGgaGGCGGu-CGAGCGCCGUccagcguccgcuGUCGAu -3'
miRNA:   3'- cACg-UCGUCuuGCUCGCGGCG------------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 32867 0.76 0.182297
Target:  5'- cGUGCGGCGccGAGCuGuuCGCCGCGUCGAa -3'
miRNA:   3'- -CACGUCGU--CUUG-CucGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 30929 0.71 0.361595
Target:  5'- -cGCGGC-GAACGcucGGCGCCGCAcgugCGGg -3'
miRNA:   3'- caCGUCGuCUUGC---UCGCGGCGUa---GCU- -5'
24094 3' -56.3 NC_005262.1 + 30886 0.66 0.686818
Target:  5'- -aGCGGcCGGAugGuGaCGCCGCucgcgcUCGAg -3'
miRNA:   3'- caCGUC-GUCUugCuC-GCGGCGu-----AGCU- -5'
24094 3' -56.3 NC_005262.1 + 29453 0.66 0.66513
Target:  5'- cUGCGGCAGAgGCGcaGGuCGCCGaggCGAa -3'
miRNA:   3'- cACGUCGUCU-UGC--UC-GCGGCguaGCU- -5'
24094 3' -56.3 NC_005262.1 + 29387 0.69 0.473213
Target:  5'- -aGCAGCAGuacAACGAcGCGCuCGCgAUCGc -3'
miRNA:   3'- caCGUCGUC---UUGCU-CGCG-GCG-UAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.