miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 29152 0.66 0.64332
Target:  5'- -aGcCAGUcGAGCGA-CGCCGgGUCGAg -3'
miRNA:   3'- caC-GUCGuCUUGCUcGCGGCgUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 28991 0.66 0.654235
Target:  5'- -aGCAGCAcGGCGAGaaggagcucaGCCuCAUCGAg -3'
miRNA:   3'- caCGUCGUcUUGCUCg---------CGGcGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 28838 0.8 0.096644
Target:  5'- uUGCGGC----CGAGCGCCGCGUCGAa -3'
miRNA:   3'- cACGUCGucuuGCUCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 28619 0.67 0.610553
Target:  5'- -gGCAuGCAGGACGAcgugaacaaGCGCC-UGUCGAa -3'
miRNA:   3'- caCGU-CGUCUUGCU---------CGCGGcGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 28405 0.74 0.269646
Target:  5'- cGUGCGcGCGGuauUGAGCGCCGCGUgCGc -3'
miRNA:   3'- -CACGU-CGUCuu-GCUCGCGGCGUA-GCu -5'
24094 3' -56.3 NC_005262.1 + 26845 0.7 0.424491
Target:  5'- -aGCAGCGGcGCGAGCGUgGUGaucUCGGc -3'
miRNA:   3'- caCGUCGUCuUGCUCGCGgCGU---AGCU- -5'
24094 3' -56.3 NC_005262.1 + 23665 0.7 0.443627
Target:  5'- uUGCAGC---GCGAGCGUCGUAcuuUCGGg -3'
miRNA:   3'- cACGUCGucuUGCUCGCGGCGU---AGCU- -5'
24094 3' -56.3 NC_005262.1 + 23414 0.66 0.66513
Target:  5'- aUGCGGCGGGcagcAUGAGC-CgCGuCAUCGAg -3'
miRNA:   3'- cACGUCGUCU----UGCUCGcG-GC-GUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 23009 0.68 0.556422
Target:  5'- cGUGCGGCAuGAAUGcGGCuuCCGCGUgGAg -3'
miRNA:   3'- -CACGUCGU-CUUGC-UCGc-GGCGUAgCU- -5'
24094 3' -56.3 NC_005262.1 + 22800 0.69 0.473213
Target:  5'- gGUGCcauCAGcAGCGAGCGCCGCcgCc- -3'
miRNA:   3'- -CACGuc-GUC-UUGCUCGCGGCGuaGcu -5'
24094 3' -56.3 NC_005262.1 + 22632 0.66 0.69759
Target:  5'- -cGCGGCGGugcccuccuGCGcGCGCUGCA-CGGu -3'
miRNA:   3'- caCGUCGUCu--------UGCuCGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 21771 0.66 0.64332
Target:  5'- uUGCGGUacGGggUGAG-GCCGCccgauUCGAg -3'
miRNA:   3'- cACGUCG--UCuuGCUCgCGGCGu----AGCU- -5'
24094 3' -56.3 NC_005262.1 + 21548 0.7 0.443627
Target:  5'- -cGCAGU-GAGCGcGGCGCUcgGCAUCGGa -3'
miRNA:   3'- caCGUCGuCUUGC-UCGCGG--CGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 21290 0.69 0.514132
Target:  5'- -aGCAGCAGAu---GCGUCGCGuUCGGc -3'
miRNA:   3'- caCGUCGUCUugcuCGCGGCGU-AGCU- -5'
24094 3' -56.3 NC_005262.1 + 18877 0.66 0.64332
Target:  5'- -cGgAGCAGcGCcuuGCGCCGCAUCc- -3'
miRNA:   3'- caCgUCGUCuUGcu-CGCGGCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 18643 0.72 0.328679
Target:  5'- -cGCAcGCAGcGCGAGCGCCuuGUCGc -3'
miRNA:   3'- caCGU-CGUCuUGCUCGCGGcgUAGCu -5'
24094 3' -56.3 NC_005262.1 + 18494 0.68 0.53513
Target:  5'- uGUGCAGCuuuccguacAGAAgcCGAGCGCgcaGCAccUCGAa -3'
miRNA:   3'- -CACGUCG---------UCUU--GCUCGCGg--CGU--AGCU- -5'
24094 3' -56.3 NC_005262.1 + 17606 0.71 0.361595
Target:  5'- -aGCGcGCGGAGCugGAGCGCCaGCAgcgCGAg -3'
miRNA:   3'- caCGU-CGUCUUG--CUCGCGG-CGUa--GCU- -5'
24094 3' -56.3 NC_005262.1 + 17210 0.72 0.328679
Target:  5'- cUGCGGCgAGGACG-GCGCUgGCGUCGu -3'
miRNA:   3'- cACGUCG-UCUUGCuCGCGG-CGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 17124 0.67 0.610553
Target:  5'- -cGCGGCgauggaccacaAGAACGcgcGCGUCGCAaUCGAg -3'
miRNA:   3'- caCGUCG-----------UCUUGCu--CGCGGCGU-AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.