Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24094 | 3' | -56.3 | NC_005262.1 | + | 41208 | 0.66 | 0.654235 |
Target: 5'- aUGUAGUuGAGC-AGCGCCGCGcaugCGGc -3' miRNA: 3'- cACGUCGuCUUGcUCGCGGCGUa---GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 3824 | 0.66 | 0.658596 |
Target: 5'- gGUGCaugcgcgccugaucgAGCGGGcgaaucugcuucGCGAGCGCCuCGUCGu -3' miRNA: 3'- -CACG---------------UCGUCU------------UGCUCGCGGcGUAGCu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 5190 | 0.66 | 0.66513 |
Target: 5'- gGUGCAGCGcauCGAgGCGCCcCAUCa- -3' miRNA: 3'- -CACGUCGUcuuGCU-CGCGGcGUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 63235 | 0.66 | 0.675994 |
Target: 5'- -aGCGGUuGGGCGAGCGgUCGCGcaCGAa -3' miRNA: 3'- caCGUCGuCUUGCUCGC-GGCGUa-GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 33109 | 0.66 | 0.686818 |
Target: 5'- cUGgaGGCGGu-CGAGCGCCGUccagcguccgcuGUCGAu -3' miRNA: 3'- cACg-UCGUCuuGCUCGCGGCG------------UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 42483 | 0.66 | 0.69759 |
Target: 5'- cGUGCGcGUAGGugGGGUuggugagcaGCCGCGagGAa -3' miRNA: 3'- -CACGU-CGUCUugCUCG---------CGGCGUagCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 16465 | 0.66 | 0.69759 |
Target: 5'- -cGCuGCGucuCGAGCGCCGaAUCGGu -3' miRNA: 3'- caCGuCGUcuuGCUCGCGGCgUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 10427 | 0.66 | 0.64332 |
Target: 5'- cUGCGGCAG-GCGcauGGCGCCG-AUCa- -3' miRNA: 3'- cACGUCGUCuUGC---UCGCGGCgUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 60989 | 0.67 | 0.632394 |
Target: 5'- -gGC-GCAGGugGAGCGCCugacggacauGCugAUCGAc -3' miRNA: 3'- caCGuCGUCUugCUCGCGG----------CG--UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 52555 | 0.67 | 0.588785 |
Target: 5'- gGUGC-GCAGcGCGAuCGUCGCuGUCGAg -3' miRNA: 3'- -CACGuCGUCuUGCUcGCGGCG-UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 60438 | 0.67 | 0.588785 |
Target: 5'- cGUGCGGCAucuAGCGAGCcGCgGCcUCGu -3' miRNA: 3'- -CACGUCGUc--UUGCUCG-CGgCGuAGCu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 61133 | 0.67 | 0.610553 |
Target: 5'- -gGCGGcCAGGACGccgcccGGCGCCGCGc--- -3' miRNA: 3'- caCGUC-GUCUUGC------UCGCGGCGUagcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 45806 | 0.67 | 0.610553 |
Target: 5'- -gGCAGCcacgucgaAGAACGugcgcacuuccGGCGCUGCGUcCGAu -3' miRNA: 3'- caCGUCG--------UCUUGC-----------UCGCGGCGUA-GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 52344 | 0.67 | 0.610553 |
Target: 5'- -cGCGGUAGGcacgaugcGCGGGCGCgGCGugUCGc -3' miRNA: 3'- caCGUCGUCU--------UGCUCGCGgCGU--AGCu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 61583 | 0.67 | 0.610553 |
Target: 5'- -aGCGGCuucGAcGCGAuGUGCCGCGcgaUCGAa -3' miRNA: 3'- caCGUCGu--CU-UGCU-CGCGGCGU---AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 55747 | 0.67 | 0.610553 |
Target: 5'- -cGCucaccCAGAACGcGCGCUGCGUCa- -3' miRNA: 3'- caCGuc---GUCUUGCuCGCGGCGUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 9673 | 0.67 | 0.621469 |
Target: 5'- -aGCgAGUAGGcgaGGGCGCCGUcgacGUCGAg -3' miRNA: 3'- caCG-UCGUCUug-CUCGCGGCG----UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 52181 | 0.67 | 0.621469 |
Target: 5'- gGUGCagggGGCAGAGCGGGaucguguggaaGUCGC-UCGAg -3' miRNA: 3'- -CACG----UCGUCUUGCUCg----------CGGCGuAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 39594 | 0.67 | 0.621469 |
Target: 5'- -cGCAGCGucGCG-GCuGCCGCcUCGGg -3' miRNA: 3'- caCGUCGUcuUGCuCG-CGGCGuAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 42111 | 0.67 | 0.632394 |
Target: 5'- cGUaCAGCAGcGCG-GCGCCGCcgCu- -3' miRNA: 3'- -CAcGUCGUCuUGCuCGCGGCGuaGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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