miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 61133 0.67 0.610553
Target:  5'- -gGCGGcCAGGACGccgcccGGCGCCGCGc--- -3'
miRNA:   3'- caCGUC-GUCUUGC------UCGCGGCGUagcu -5'
24094 3' -56.3 NC_005262.1 + 61583 0.67 0.610553
Target:  5'- -aGCGGCuucGAcGCGAuGUGCCGCGcgaUCGAa -3'
miRNA:   3'- caCGUCGu--CU-UGCU-CGCGGCGU---AGCU- -5'
24094 3' -56.3 NC_005262.1 + 29152 0.66 0.64332
Target:  5'- -aGcCAGUcGAGCGA-CGCCGgGUCGAg -3'
miRNA:   3'- caC-GUCGuCUUGCUcGCGGCgUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 33109 0.66 0.686818
Target:  5'- cUGgaGGCGGu-CGAGCGCCGUccagcguccgcuGUCGAu -3'
miRNA:   3'- cACg-UCGUCuuGCUCGCGGCG------------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 22800 0.69 0.473213
Target:  5'- gGUGCcauCAGcAGCGAGCGCCGCcgCc- -3'
miRNA:   3'- -CACGuc-GUC-UUGCUCGCGGCGuaGcu -5'
24094 3' -56.3 NC_005262.1 + 5271 0.68 0.56716
Target:  5'- cGUGCAGCAGcACGGGCaggGCgGUCGAc -3'
miRNA:   3'- -CACGUCGUCuUGCUCGcggCG-UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 9673 0.67 0.621469
Target:  5'- -aGCgAGUAGGcgaGGGCGCCGUcgacGUCGAg -3'
miRNA:   3'- caCG-UCGUCUug-CUCGCGGCG----UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 42483 0.66 0.69759
Target:  5'- cGUGCGcGUAGGugGGGUuggugagcaGCCGCGagGAa -3'
miRNA:   3'- -CACGU-CGUCUugCUCG---------CGGCGUagCU- -5'
24094 3' -56.3 NC_005262.1 + 51342 0.68 0.576869
Target:  5'- cGUG-AGCgacgucucgacgaGGAuCGuGCGCCGCAUCGGc -3'
miRNA:   3'- -CACgUCG-------------UCUuGCuCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 16465 0.66 0.69759
Target:  5'- -cGCuGCGucuCGAGCGCCGaAUCGGu -3'
miRNA:   3'- caCGuCGUcuuGCUCGCGGCgUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 55747 0.67 0.610553
Target:  5'- -cGCucaccCAGAACGcGCGCUGCGUCa- -3'
miRNA:   3'- caCGuc---GUCUUGCuCGCGGCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 60438 0.67 0.588785
Target:  5'- cGUGCGGCAucuAGCGAGCcGCgGCcUCGu -3'
miRNA:   3'- -CACGUCGUc--UUGCUCG-CGgCGuAGCu -5'
24094 3' -56.3 NC_005262.1 + 42111 0.67 0.632394
Target:  5'- cGUaCAGCAGcGCG-GCGCCGCcgCu- -3'
miRNA:   3'- -CAcGUCGUCuUGCuCGCGGCGuaGcu -5'
24094 3' -56.3 NC_005262.1 + 21771 0.66 0.64332
Target:  5'- uUGCGGUacGGggUGAG-GCCGCccgauUCGAg -3'
miRNA:   3'- cACGUCG--UCuuGCUCgCGGCGu----AGCU- -5'
24094 3' -56.3 NC_005262.1 + 41208 0.66 0.654235
Target:  5'- aUGUAGUuGAGC-AGCGCCGCGcaugCGGc -3'
miRNA:   3'- cACGUCGuCUUGcUCGCGGCGUa---GCU- -5'
24094 3' -56.3 NC_005262.1 + 63235 0.66 0.675994
Target:  5'- -aGCGGUuGGGCGAGCGgUCGCGcaCGAa -3'
miRNA:   3'- caCGUCGuCUUGCUCGC-GGCGUa-GCU- -5'
24094 3' -56.3 NC_005262.1 + 21548 0.7 0.443627
Target:  5'- -cGCAGU-GAGCGcGGCGCUcgGCAUCGGa -3'
miRNA:   3'- caCGUCGuCUUGC-UCGCGG--CGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 51123 0.69 0.463238
Target:  5'- --aCGGCAGAACGGGCGCagGguUCGc -3'
miRNA:   3'- cacGUCGUCUUGCUCGCGg-CguAGCu -5'
24094 3' -56.3 NC_005262.1 + 10634 0.69 0.50376
Target:  5'- -cGCgaagGGCGGGuugcCGAuCGCCGCGUCGAa -3'
miRNA:   3'- caCG----UCGUCUu---GCUcGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 46794 0.68 0.556422
Target:  5'- --uCAGCAcGACGAGCGCgCGC-UCGGc -3'
miRNA:   3'- cacGUCGUcUUGCUCGCG-GCGuAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.