miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 58132 0.68 0.545743
Target:  5'- gGUGCAGUAccucccGAugGuGCGCgGCAUCc- -3'
miRNA:   3'- -CACGUCGU------CUugCuCGCGgCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 42111 0.67 0.632394
Target:  5'- cGUaCAGCAGcGCG-GCGCCGCcgCu- -3'
miRNA:   3'- -CAcGUCGUCuUGCuCGCGGCGuaGcu -5'
24094 3' -56.3 NC_005262.1 + 17210 0.72 0.328679
Target:  5'- cUGCGGCgAGGACG-GCGCUgGCGUCGu -3'
miRNA:   3'- cACGUCG-UCUUGCuCGCGG-CGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 60989 0.67 0.632394
Target:  5'- -gGC-GCAGGugGAGCGCCugacggacauGCugAUCGAc -3'
miRNA:   3'- caCGuCGUCUugCUCGCGG----------CG--UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 52181 0.67 0.621469
Target:  5'- gGUGCagggGGCAGAGCGGGaucguguggaaGUCGC-UCGAg -3'
miRNA:   3'- -CACG----UCGUCUUGCUCg----------CGGCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 61583 0.67 0.610553
Target:  5'- -aGCGGCuucGAcGCGAuGUGCCGCGcgaUCGAa -3'
miRNA:   3'- caCGUCGu--CU-UGCU-CGCGGCGU---AGCU- -5'
24094 3' -56.3 NC_005262.1 + 12605 0.74 0.243479
Target:  5'- -cGCGGCuccAGCGGGcCGCCGCGUCGu -3'
miRNA:   3'- caCGUCGuc-UUGCUC-GCGGCGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 28405 0.74 0.269646
Target:  5'- cGUGCGcGCGGuauUGAGCGCCGCGUgCGc -3'
miRNA:   3'- -CACGU-CGUCuu-GCUCGCGGCGUA-GCu -5'
24094 3' -56.3 NC_005262.1 + 14029 0.73 0.316148
Target:  5'- -gGCAGCGGccggagccucgggcGCGGGCGCCGCcggcGUCGGu -3'
miRNA:   3'- caCGUCGUCu-------------UGCUCGCGGCG----UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 1743 0.84 0.050035
Target:  5'- uGUGCAGgAG-GCGAuGCGCCGCAUCGAg -3'
miRNA:   3'- -CACGUCgUCuUGCU-CGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 43277 0.71 0.378892
Target:  5'- aGUGgGGUgAGGucgucGCGAGCGCCGCGcCGAu -3'
miRNA:   3'- -CACgUCG-UCU-----UGCUCGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 21548 0.7 0.443627
Target:  5'- -cGCAGU-GAGCGcGGCGCUcgGCAUCGGa -3'
miRNA:   3'- caCGUCGuCUUGC-UCGCGG--CGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 22800 0.69 0.473213
Target:  5'- gGUGCcauCAGcAGCGAGCGCCGCcgCc- -3'
miRNA:   3'- -CACGuc-GUC-UUGCUCGCGGCGuaGcu -5'
24094 3' -56.3 NC_005262.1 + 10634 0.69 0.50376
Target:  5'- -cGCgaagGGCGGGuugcCGAuCGCCGCGUCGAa -3'
miRNA:   3'- caCG----UCGUCUu---GCUcGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 51342 0.68 0.576869
Target:  5'- cGUG-AGCgacgucucgacgaGGAuCGuGCGCCGCAUCGGc -3'
miRNA:   3'- -CACgUCG-------------UCUuGCuCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 60438 0.67 0.588785
Target:  5'- cGUGCGGCAucuAGCGAGCcGCgGCcUCGu -3'
miRNA:   3'- -CACGUCGUc--UUGCUCG-CGgCGuAGCu -5'
24094 3' -56.3 NC_005262.1 + 51232 0.87 0.03141
Target:  5'- -aGCAGCAGcucGACGAGCGCCGCcgCGAc -3'
miRNA:   3'- caCGUCGUC---UUGCUCGCGGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 13805 0.76 0.187243
Target:  5'- -cGCGGCuucaucggcgGGAGCGGGCGCCGCugucucGUCGGc -3'
miRNA:   3'- caCGUCG----------UCUUGCUCGCGGCG------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 10517 0.67 0.621469
Target:  5'- -aGCAGCAGcGCGGGgGCgGC--CGAa -3'
miRNA:   3'- caCGUCGUCuUGCUCgCGgCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 50339 0.7 0.424491
Target:  5'- -cGC-GCAGGACGaAGCGCCcGCGaCGAc -3'
miRNA:   3'- caCGuCGUCUUGC-UCGCGG-CGUaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.