miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 49150 0.71 0.378892
Target:  5'- -gGCAcGguGGGCGuGCagGCCGCAUCGGc -3'
miRNA:   3'- caCGU-CguCUUGCuCG--CGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 17124 0.67 0.610553
Target:  5'- -cGCGGCgauggaccacaAGAACGcgcGCGUCGCAaUCGAg -3'
miRNA:   3'- caCGUCG-----------UCUUGCu--CGCGGCGU-AGCU- -5'
24094 3' -56.3 NC_005262.1 + 41618 0.73 0.313071
Target:  5'- -gGCAGCGGAACGGuGaCGCCGUacaaugguGUCGGu -3'
miRNA:   3'- caCGUCGUCUUGCU-C-GCGGCG--------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 2766 0.69 0.493479
Target:  5'- -aGCA-CGGcGGCGGGUGCCGCAUCc- -3'
miRNA:   3'- caCGUcGUC-UUGCUCGCGGCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 32867 0.76 0.182297
Target:  5'- cGUGCGGCGccGAGCuGuuCGCCGCGUCGAa -3'
miRNA:   3'- -CACGUCGU--CUUG-CucGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 34027 0.7 0.424491
Target:  5'- -gGCcGCAu--CGuGCGCCGCGUCGAu -3'
miRNA:   3'- caCGuCGUcuuGCuCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 50339 0.7 0.424491
Target:  5'- -cGC-GCAGGACGaAGCGCCcGCGaCGAc -3'
miRNA:   3'- caCGuCGUCUUGC-UCGCGG-CGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 30886 0.66 0.686818
Target:  5'- -aGCGGcCGGAugGuGaCGCCGCucgcgcUCGAg -3'
miRNA:   3'- caCGUC-GUCUugCuC-GCGGCGu-----AGCU- -5'
24094 3' -56.3 NC_005262.1 + 28619 0.67 0.610553
Target:  5'- -gGCAuGCAGGACGAcgugaacaaGCGCC-UGUCGAa -3'
miRNA:   3'- caCGU-CGUCUUGCU---------CGCGGcGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 46659 0.68 0.56716
Target:  5'- -aGCGGCAGcAUG-GCGCCgGCAcCGAc -3'
miRNA:   3'- caCGUCGUCuUGCuCGCGG-CGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 10517 0.67 0.621469
Target:  5'- -aGCAGCAGcGCGGGgGCgGC--CGAa -3'
miRNA:   3'- caCGUCGUCuUGCUCgCGgCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 6682 0.68 0.556422
Target:  5'- -aGCGGCGGAACuGGaGCC-CGUCGAc -3'
miRNA:   3'- caCGUCGUCUUGcUCgCGGcGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 18494 0.68 0.53513
Target:  5'- uGUGCAGCuuuccguacAGAAgcCGAGCGCgcaGCAccUCGAa -3'
miRNA:   3'- -CACGUCG---------UCUU--GCUCGCGg--CGU--AGCU- -5'
24094 3' -56.3 NC_005262.1 + 13540 0.68 0.524591
Target:  5'- uGUGCAGCGGcauCGAG-GCCGCGa--- -3'
miRNA:   3'- -CACGUCGUCuu-GCUCgCGGCGUagcu -5'
24094 3' -56.3 NC_005262.1 + 4872 0.69 0.514132
Target:  5'- -cGCAGCuugcCGAGCGCCGacUCGAc -3'
miRNA:   3'- caCGUCGucuuGCUCGCGGCguAGCU- -5'
24094 3' -56.3 NC_005262.1 + 44988 0.66 0.69759
Target:  5'- cGUGCAGCAGucc--GCGCgGCAggCGGc -3'
miRNA:   3'- -CACGUCGUCuugcuCGCGgCGUa-GCU- -5'
24094 3' -56.3 NC_005262.1 + 6640 0.66 0.69759
Target:  5'- uGUGCGGCGGcgcuuCGAucGCGUCGCcguccUCGAu -3'
miRNA:   3'- -CACGUCGUCuu---GCU--CGCGGCGu----AGCU- -5'
24094 3' -56.3 NC_005262.1 + 59179 0.66 0.693288
Target:  5'- -aGCAGCucacgggcccgcuGAugGAGCGCCuuGCgaaGUCGGg -3'
miRNA:   3'- caCGUCGu------------CUugCUCGCGG--CG---UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 58208 0.66 0.686818
Target:  5'- cUGCGG-AGAGCG-GCGCCGCccguaccaCGAa -3'
miRNA:   3'- cACGUCgUCUUGCuCGCGGCGua------GCU- -5'
24094 3' -56.3 NC_005262.1 + 23009 0.68 0.556422
Target:  5'- cGUGCGGCAuGAAUGcGGCuuCCGCGUgGAg -3'
miRNA:   3'- -CACGUCGU-CUUGC-UCGc-GGCGUAgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.