Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24094 | 3' | -56.3 | NC_005262.1 | + | 14243 | 0.66 | 0.66513 |
Target: 5'- -cGCacgAGCAGGACGcAGCGUCGC--CGGa -3' miRNA: 3'- caCG---UCGUCUUGC-UCGCGGCGuaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 29453 | 0.66 | 0.66513 |
Target: 5'- cUGCGGCAGAgGCGcaGGuCGCCGaggCGAa -3' miRNA: 3'- cACGUCGUCU-UGC--UC-GCGGCguaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 23414 | 0.66 | 0.66513 |
Target: 5'- aUGCGGCGGGcagcAUGAGC-CgCGuCAUCGAg -3' miRNA: 3'- cACGUCGUCU----UGCUCGcG-GC-GUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 12331 | 0.66 | 0.686818 |
Target: 5'- cGUGCcGCAGcGCGcGGCGgCaGCAUUGAa -3' miRNA: 3'- -CACGuCGUCuUGC-UCGCgG-CGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 30886 | 0.66 | 0.686818 |
Target: 5'- -aGCGGcCGGAugGuGaCGCCGCucgcgcUCGAg -3' miRNA: 3'- caCGUC-GUCUugCuC-GCGGCGu-----AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 58208 | 0.66 | 0.686818 |
Target: 5'- cUGCGG-AGAGCG-GCGCCGCccguaccaCGAa -3' miRNA: 3'- cACGUCgUCUUGCuCGCGGCGua------GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 59179 | 0.66 | 0.693288 |
Target: 5'- -aGCAGCucacgggcccgcuGAugGAGCGCCuuGCgaaGUCGGg -3' miRNA: 3'- caCGUCGu------------CUugCUCGCGG--CG---UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 6640 | 0.66 | 0.69759 |
Target: 5'- uGUGCGGCGGcgcuuCGAucGCGUCGCcguccUCGAu -3' miRNA: 3'- -CACGUCGUCuu---GCU--CGCGGCGu----AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 52200 | 0.66 | 0.66513 |
Target: 5'- cGUGCAGgAGu-CGaAGCGCCuGCA-CGAc -3' miRNA: 3'- -CACGUCgUCuuGC-UCGCGG-CGUaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 28991 | 0.66 | 0.654235 |
Target: 5'- -aGCAGCAcGGCGAGaaggagcucaGCCuCAUCGAg -3' miRNA: 3'- caCGUCGUcUUGCUCg---------CGGcGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 6682 | 0.68 | 0.556422 |
Target: 5'- -aGCGGCGGAACuGGaGCC-CGUCGAc -3' miRNA: 3'- caCGUCGUCUUGcUCgCGGcGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 23009 | 0.68 | 0.556422 |
Target: 5'- cGUGCGGCAuGAAUGcGGCuuCCGCGUgGAg -3' miRNA: 3'- -CACGUCGU-CUUGC-UCGc-GGCGUAgCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 46659 | 0.68 | 0.56716 |
Target: 5'- -aGCGGCAGcAUG-GCGCCgGCAcCGAc -3' miRNA: 3'- caCGUCGUCuUGCuCGCGG-CGUaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 28619 | 0.67 | 0.610553 |
Target: 5'- -gGCAuGCAGGACGAcgugaacaaGCGCC-UGUCGAa -3' miRNA: 3'- caCGU-CGUCUUGCU---------CGCGGcGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 17124 | 0.67 | 0.610553 |
Target: 5'- -cGCGGCgauggaccacaAGAACGcgcGCGUCGCAaUCGAg -3' miRNA: 3'- caCGUCG-----------UCUUGCu--CGCGGCGU-AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 10517 | 0.67 | 0.621469 |
Target: 5'- -aGCAGCAGcGCGGGgGCgGC--CGAa -3' miRNA: 3'- caCGUCGUCuUGCUCgCGgCGuaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 33209 | 0.67 | 0.632394 |
Target: 5'- -cGCAGgAcGACGAGCGCCaCAUUGc -3' miRNA: 3'- caCGUCgUcUUGCUCGCGGcGUAGCu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 42239 | 0.67 | 0.632394 |
Target: 5'- -cGCGGUuccGAugcCGAGCGCCGCGcUCa- -3' miRNA: 3'- caCGUCGu--CUu--GCUCGCGGCGU-AGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 53435 | 0.67 | 0.632394 |
Target: 5'- cGUGCuguuccucCAGaAGCGcGGCGCCGgCGUCGAg -3' miRNA: 3'- -CACGuc------GUC-UUGC-UCGCGGC-GUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 18877 | 0.66 | 0.64332 |
Target: 5'- -cGgAGCAGcGCcuuGCGCCGCAUCc- -3' miRNA: 3'- caCgUCGUCuUGcu-CGCGGCGUAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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