Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24094 | 3' | -56.3 | NC_005262.1 | + | 41208 | 0.66 | 0.654235 |
Target: 5'- aUGUAGUuGAGC-AGCGCCGCGcaugCGGc -3' miRNA: 3'- cACGUCGuCUUGcUCGCGGCGUa---GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 9174 | 0.66 | 0.650962 |
Target: 5'- cUGCucGGCGGAccACGAGCcgaGCCGCgaguuguagcugacGUCGAu -3' miRNA: 3'- cACG--UCGUCU--UGCUCG---CGGCG--------------UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 18877 | 0.66 | 0.64332 |
Target: 5'- -cGgAGCAGcGCcuuGCGCCGCAUCc- -3' miRNA: 3'- caCgUCGUCuUGcu-CGCGGCGUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 40073 | 0.66 | 0.64332 |
Target: 5'- -gGUcaaAGCAGggUGAuCGCCGCgugGUCGAc -3' miRNA: 3'- caCG---UCGUCuuGCUcGCGGCG---UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 29152 | 0.66 | 0.64332 |
Target: 5'- -aGcCAGUcGAGCGA-CGCCGgGUCGAg -3' miRNA: 3'- caC-GUCGuCUUGCUcGCGGCgUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 21771 | 0.66 | 0.64332 |
Target: 5'- uUGCGGUacGGggUGAG-GCCGCccgauUCGAg -3' miRNA: 3'- cACGUCG--UCuuGCUCgCGGCGu----AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 10427 | 0.66 | 0.64332 |
Target: 5'- cUGCGGCAG-GCGcauGGCGCCG-AUCa- -3' miRNA: 3'- cACGUCGUCuUGC---UCGCGGCgUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 33209 | 0.67 | 0.632394 |
Target: 5'- -cGCAGgAcGACGAGCGCCaCAUUGc -3' miRNA: 3'- caCGUCgUcUUGCUCGCGGcGUAGCu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 57224 | 0.67 | 0.632394 |
Target: 5'- -gGCGGCAucGCGAcgcGCGCCGCcaAUCa- -3' miRNA: 3'- caCGUCGUcuUGCU---CGCGGCG--UAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 42111 | 0.67 | 0.632394 |
Target: 5'- cGUaCAGCAGcGCG-GCGCCGCcgCu- -3' miRNA: 3'- -CAcGUCGUCuUGCuCGCGGCGuaGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 53435 | 0.67 | 0.632394 |
Target: 5'- cGUGCuguuccucCAGaAGCGcGGCGCCGgCGUCGAg -3' miRNA: 3'- -CACGuc------GUC-UUGC-UCGCGGC-GUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 60989 | 0.67 | 0.632394 |
Target: 5'- -gGC-GCAGGugGAGCGCCugacggacauGCugAUCGAc -3' miRNA: 3'- caCGuCGUCUugCUCGCGG----------CG--UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 42239 | 0.67 | 0.632394 |
Target: 5'- -cGCGGUuccGAugcCGAGCGCCGCGcUCa- -3' miRNA: 3'- caCGUCGu--CUu--GCUCGCGGCGU-AGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 39594 | 0.67 | 0.621469 |
Target: 5'- -cGCAGCGucGCG-GCuGCCGCcUCGGg -3' miRNA: 3'- caCGUCGUcuUGCuCG-CGGCGuAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 9673 | 0.67 | 0.621469 |
Target: 5'- -aGCgAGUAGGcgaGGGCGCCGUcgacGUCGAg -3' miRNA: 3'- caCG-UCGUCUug-CUCGCGGCG----UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 52181 | 0.67 | 0.621469 |
Target: 5'- gGUGCagggGGCAGAGCGGGaucguguggaaGUCGC-UCGAg -3' miRNA: 3'- -CACG----UCGUCUUGCUCg----------CGGCGuAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 10517 | 0.67 | 0.621469 |
Target: 5'- -aGCAGCAGcGCGGGgGCgGC--CGAa -3' miRNA: 3'- caCGUCGUCuUGCUCgCGgCGuaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 17124 | 0.67 | 0.610553 |
Target: 5'- -cGCGGCgauggaccacaAGAACGcgcGCGUCGCAaUCGAg -3' miRNA: 3'- caCGUCG-----------UCUUGCu--CGCGGCGU-AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 28619 | 0.67 | 0.610553 |
Target: 5'- -gGCAuGCAGGACGAcgugaacaaGCGCC-UGUCGAa -3' miRNA: 3'- caCGU-CGUCUUGCU---------CGCGGcGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 55747 | 0.67 | 0.610553 |
Target: 5'- -cGCucaccCAGAACGcGCGCUGCGUCa- -3' miRNA: 3'- caCGuc---GUCUUGCuCGCGGCGUAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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