miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
24094	5'	-62.2	NC_005262.1	+	42138	0.66	0.377796
	Target:  5'- aAGCCgGUCUacGCgGCGCCGggCCCGGu -3' miRNA:   3'- -UUGG-CAGAccCG-CGCGGCaaGGGCCu -5'
24094	5'	-62.2	NC_005262.1	+	58271	0.66	0.377796
	Target:  5'- gAGCCauaUCUGGGCGaCGaCGaUCCCGGu -3' miRNA:   3'- -UUGGc--AGACCCGC-GCgGCaAGGGCCu -5'
24094	5'	-62.2	NC_005262.1	+	38833	0.67	0.372794
	Target:  5'- aAGCCGgccuguuccugaagCUGGGCGCGCCG--CgCGGc -3' miRNA:   3'- -UUGGCa-------------GACCCGCGCGGCaaGgGCCu -5'
24094	5'	-62.2	NC_005262.1	+	61690	0.68	0.307592
	Target:  5'- aAGCCGugacgaUCaGGGCGCGCCGgguucgCUCGGc -3' miRNA:   3'- -UUGGC------AGaCCCGCGCGGCaa----GGGCCu -5'
24094	5'	-62.2	NC_005262.1	+	56514	0.69	0.260205
	Target:  5'- gAGCa-UCUGGaCGCGCCGUgguUCCCGGc -3' miRNA:   3'- -UUGgcAGACCcGCGCGGCA---AGGGCCu -5'
24094	5'	-62.2	NC_005262.1	+	2853	0.69	0.247806
	Target:  5'- cGCUGUCcGGGUuguacGCGCCGUUCagCGGGa -3' miRNA:   3'- uUGGCAGaCCCG-----CGCGGCAAGg-GCCU- -5'
24094	5'	-62.2	NC_005262.1	+	3637	0.7	0.235899
	Target:  5'- cAUCGgCUGGGCGCGCagcuucUCCCGGu -3' miRNA:   3'- uUGGCaGACCCGCGCGgca---AGGGCCu -5'
24094	5'	-62.2	NC_005262.1	+	57331	1.06	0.000442
	Target:  5'- cAACCGUCUGGGCGCGCCGUUCCCGGAa -3' miRNA:   3'- -UUGGCAGACCCGCGCGGCAAGGGCCU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home