miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24095 5' -56.5 NC_005262.1 + 57978 1.08 0.000979
Target:  5'- uGGCGCGCCCGCAUCUCCUACGGAAAAa -3'
miRNA:   3'- -CCGCGCGGGCGUAGAGGAUGCCUUUU- -5'
24095 5' -56.5 NC_005262.1 + 7546 0.66 0.69292
Target:  5'- cGGCGCGCUCGaCGacaUCCUucccgugcagcgucACGGAGc- -3'
miRNA:   3'- -CCGCGCGGGC-GUag-AGGA--------------UGCCUUuu -5'
24095 5' -56.5 NC_005262.1 + 18302 0.66 0.685395
Target:  5'- aGGCGCGCCgGUucgCUUC-GCGGcGAAu -3'
miRNA:   3'- -CCGCGCGGgCGua-GAGGaUGCCuUUU- -5'
24095 5' -56.5 NC_005262.1 + 15406 0.66 0.685395
Target:  5'- uGCGCGCugCUGCugAUCUUCUggGCGGggGGa -3'
miRNA:   3'- cCGCGCG--GGCG--UAGAGGA--UGCCuuUU- -5'
24095 5' -56.5 NC_005262.1 + 5105 0.66 0.685395
Target:  5'- uGCGCGCCCGguUCacgaugCCUgccaugcgcgACGGGc-- -3'
miRNA:   3'- cCGCGCGGGCguAGa-----GGA----------UGCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 1489 0.66 0.663774
Target:  5'- cGGCGCuGCCgcUGCAUCU---GCGGAGGGa -3'
miRNA:   3'- -CCGCG-CGG--GCGUAGAggaUGCCUUUU- -5'
24095 5' -56.5 NC_005262.1 + 49158 0.66 0.663774
Target:  5'- gGGCGUGCaggCCGCAUCggCCgcaGCGGc--- -3'
miRNA:   3'- -CCGCGCG---GGCGUAGa-GGa--UGCCuuuu -5'
24095 5' -56.5 NC_005262.1 + 22152 0.66 0.652915
Target:  5'- cGGC-UGCCCGCAUCgCCgagcUGGAGGc -3'
miRNA:   3'- -CCGcGCGGGCGUAGaGGau--GCCUUUu -5'
24095 5' -56.5 NC_005262.1 + 1997 0.67 0.620264
Target:  5'- uGGUGUGCUCGCAUgCUCCacgccACGGc--- -3'
miRNA:   3'- -CCGCGCGGGCGUA-GAGGa----UGCCuuuu -5'
24095 5' -56.5 NC_005262.1 + 17008 0.68 0.555469
Target:  5'- cGCGCGCUCGUcgugcugaaGUCgaCCgagGCGGAAAAg -3'
miRNA:   3'- cCGCGCGGGCG---------UAGa-GGa--UGCCUUUU- -5'
24095 5' -56.5 NC_005262.1 + 13223 0.75 0.231483
Target:  5'- cGGCGCGUCCGCcaacgCUCCUcucggggugACGGAc-- -3'
miRNA:   3'- -CCGCGCGGGCGua---GAGGA---------UGCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 58192 0.72 0.320804
Target:  5'- aGUGUuUCCGCGUCgCCUGCGGAGAGc -3'
miRNA:   3'- cCGCGcGGGCGUAGaGGAUGCCUUUU- -5'
24095 5' -56.5 NC_005262.1 + 37876 0.7 0.414745
Target:  5'- cGGCGCGCCCGgAgg-CacggGCGGGAAGu -3'
miRNA:   3'- -CCGCGCGGGCgUagaGga--UGCCUUUU- -5'
24095 5' -56.5 NC_005262.1 + 25555 0.7 0.443143
Target:  5'- cGGCGgcacgauccacCGCCUGCAcaUCUCCgaguuCGGGAAAa -3'
miRNA:   3'- -CCGC-----------GCGGGCGU--AGAGGau---GCCUUUU- -5'
24095 5' -56.5 NC_005262.1 + 34130 0.7 0.452851
Target:  5'- aGCGCGCaccgCGCAUCUUCUACGu---- -3'
miRNA:   3'- cCGCGCGg---GCGUAGAGGAUGCcuuuu -5'
24095 5' -56.5 NC_005262.1 + 13152 0.69 0.482645
Target:  5'- cGCGCGCUgCGCGgcacaaCUCCUugGCGGGAGu -3'
miRNA:   3'- cCGCGCGG-GCGUa-----GAGGA--UGCCUUUu -5'
24095 5' -56.5 NC_005262.1 + 50273 0.68 0.523769
Target:  5'- gGGCGCGCCCGCGcCggCCgagcccgugACGGc--- -3'
miRNA:   3'- -CCGCGCGGGCGUaGa-GGa--------UGCCuuuu -5'
24095 5' -56.5 NC_005262.1 + 37178 0.69 0.472606
Target:  5'- gGGCGCuucgauuuGCCCGCGgg-CUUGCGGAc-- -3'
miRNA:   3'- -CCGCG--------CGGGCGUagaGGAUGCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 57569 0.66 0.685395
Target:  5'- cGGCGgGCUucaGCAUCUCg-GCGGGc-- -3'
miRNA:   3'- -CCGCgCGGg--CGUAGAGgaUGCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 51148 0.66 0.652915
Target:  5'- cGCGCGCCgCGCGcgcuUCUUCUucACGGu--- -3'
miRNA:   3'- cCGCGCGG-GCGU----AGAGGA--UGCCuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.