Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24095 | 5' | -56.5 | NC_005262.1 | + | 21129 | 0.67 | 0.587703 |
Target: 5'- gGGCGCcacgGCUCGCAgagccagagcucUUUCCcGCGGAAGg -3' miRNA: 3'- -CCGCG----CGGGCGU------------AGAGGaUGCCUUUu -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 12584 | 0.67 | 0.576911 |
Target: 5'- cGGUGCgaucagcaucGCCCGCGcggCUCCaGCGGGc-- -3' miRNA: 3'- -CCGCG----------CGGGCGUa--GAGGaUGCCUuuu -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 12975 | 0.68 | 0.566164 |
Target: 5'- aGCGUGCCCGU--CUCCgGCGcGAAGc -3' miRNA: 3'- cCGCGCGGGCGuaGAGGaUGC-CUUUu -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 17709 | 0.68 | 0.566164 |
Target: 5'- cGGCGCGgCCGUc-CUCCcaauaUGCGGAGc- -3' miRNA: 3'- -CCGCGCgGGCGuaGAGG-----AUGCCUUuu -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 17008 | 0.68 | 0.555469 |
Target: 5'- cGCGCGCUCGUcgugcugaaGUCgaCCgagGCGGAAAAg -3' miRNA: 3'- cCGCGCGGGCG---------UAGa-GGa--UGCCUUUU- -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 50273 | 0.68 | 0.523769 |
Target: 5'- gGGCGCGCCCGCGcCggCCgagcccgugACGGc--- -3' miRNA: 3'- -CCGCGCGGGCGUaGa-GGa--------UGCCuuuu -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 22325 | 0.69 | 0.513354 |
Target: 5'- uGUGCGCCgGCAUCUgggCUGCGGu--- -3' miRNA: 3'- cCGCGCGGgCGUAGAg--GAUGCCuuuu -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 52457 | 0.69 | 0.482645 |
Target: 5'- cGCGCGCgaGCGgcgUCUUGCGGAGGAg -3' miRNA: 3'- cCGCGCGggCGUag-AGGAUGCCUUUU- -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 13152 | 0.69 | 0.482645 |
Target: 5'- cGCGCGCUgCGCGgcacaaCUCCUugGCGGGAGu -3' miRNA: 3'- cCGCGCGG-GCGUa-----GAGGA--UGCCUUUu -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 37178 | 0.69 | 0.472606 |
Target: 5'- gGGCGCuucgauuuGCCCGCGgg-CUUGCGGAc-- -3' miRNA: 3'- -CCGCG--------CGGGCGUagaGGAUGCCUuuu -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 34130 | 0.7 | 0.452851 |
Target: 5'- aGCGCGCaccgCGCAUCUUCUACGu---- -3' miRNA: 3'- cCGCGCGg---GCGUAGAGGAUGCcuuuu -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 25555 | 0.7 | 0.443143 |
Target: 5'- cGGCGgcacgauccacCGCCUGCAcaUCUCCgaguuCGGGAAAa -3' miRNA: 3'- -CCGC-----------GCGGGCGU--AGAGGau---GCCUUUU- -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 37876 | 0.7 | 0.414745 |
Target: 5'- cGGCGCGCCCGgAgg-CacggGCGGGAAGu -3' miRNA: 3'- -CCGCGCGGGCgUagaGga--UGCCUUUU- -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 58192 | 0.72 | 0.320804 |
Target: 5'- aGUGUuUCCGCGUCgCCUGCGGAGAGc -3' miRNA: 3'- cCGCGcGGGCGUAGaGGAUGCCUUUU- -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 13223 | 0.75 | 0.231483 |
Target: 5'- cGGCGCGUCCGCcaacgCUCCUcucggggugACGGAc-- -3' miRNA: 3'- -CCGCGCGGGCGua---GAGGA---------UGCCUuuu -5' |
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24095 | 5' | -56.5 | NC_005262.1 | + | 57978 | 1.08 | 0.000979 |
Target: 5'- uGGCGCGCCCGCAUCUCCUACGGAAAAa -3' miRNA: 3'- -CCGCGCGGGCGUAGAGGAUGCCUUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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