miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24096 5' -60.8 NC_005262.1 + 43073 0.66 0.478846
Target:  5'- aGCUGCcgaGCGACGCgaccgugaugGGCUGCG-CCUUc -3'
miRNA:   3'- aCGACG---UGCUGUG----------CCGGCGCaGGGAc -5'
24096 5' -60.8 NC_005262.1 + 43815 0.72 0.191948
Target:  5'- gGCgaucGCgGCGACACGGCCGCGggCCg- -3'
miRNA:   3'- aCGa---CG-UGCUGUGCCGGCGCagGGac -5'
24096 5' -60.8 NC_005262.1 + 45633 0.67 0.413303
Target:  5'- cGCUcGCGCGAUcagGCgGGCaCGCGcUCCCg- -3'
miRNA:   3'- aCGA-CGUGCUG---UG-CCG-GCGC-AGGGac -5'
24096 5' -60.8 NC_005262.1 + 46314 0.67 0.378421
Target:  5'- cGC-GCGCGGCGCGcGCUuCGUCCUg- -3'
miRNA:   3'- aCGaCGUGCUGUGC-CGGcGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 46537 0.7 0.259632
Target:  5'- aGCccaGCGCGGCGcCGGCCGcCGcUCCCg- -3'
miRNA:   3'- aCGa--CGUGCUGU-GCCGGC-GC-AGGGac -5'
24096 5' -60.8 NC_005262.1 + 46613 0.69 0.322307
Target:  5'- uUGCUGa---ACGCGGUCGCGUCCUc- -3'
miRNA:   3'- -ACGACgugcUGUGCCGGCGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 47742 0.66 0.4501
Target:  5'- cUGgUGCGCcGC-CGGCCGCGgcgaaCCCg- -3'
miRNA:   3'- -ACgACGUGcUGuGCCGGCGCa----GGGac -5'
24096 5' -60.8 NC_005262.1 + 49743 0.66 0.431472
Target:  5'- aGCcGCAcCGACGcCGGCgGCG-CCCg- -3'
miRNA:   3'- aCGaCGU-GCUGU-GCCGgCGCaGGGac -5'
24096 5' -60.8 NC_005262.1 + 50158 0.69 0.314817
Target:  5'- aGCUGCGCGAC-CGcCUGCGcuaCCUGa -3'
miRNA:   3'- aCGACGUGCUGuGCcGGCGCag-GGAC- -5'
24096 5' -60.8 NC_005262.1 + 50952 0.67 0.386954
Target:  5'- aGCUcgGCACGACGguucccgcgaGGCCGCGcUCCUUc -3'
miRNA:   3'- aCGA--CGUGCUGUg---------CCGGCGC-AGGGAc -5'
24096 5' -60.8 NC_005262.1 + 51464 0.67 0.395614
Target:  5'- aUGCUGCcgccgcgcgcuGCGGCACGaGCCGCaUgCCg- -3'
miRNA:   3'- -ACGACG-----------UGCUGUGC-CGGCGcAgGGac -5'
24096 5' -60.8 NC_005262.1 + 51684 0.67 0.413303
Target:  5'- cUGCUcGCGCG-CACGGCgGCGcugauugcgCCCg- -3'
miRNA:   3'- -ACGA-CGUGCuGUGCCGgCGCa--------GGGac -5'
24096 5' -60.8 NC_005262.1 + 52612 0.69 0.314817
Target:  5'- cGC-GCACGAuCACGGCgGCGUCgUCg- -3'
miRNA:   3'- aCGaCGUGCU-GUGCCGgCGCAG-GGac -5'
24096 5' -60.8 NC_005262.1 + 52856 0.66 0.4501
Target:  5'- cUGCUGCGCGuaGCGCGGCuCGaUGUCg--- -3'
miRNA:   3'- -ACGACGUGC--UGUGCCG-GC-GCAGggac -5'
24096 5' -60.8 NC_005262.1 + 53246 0.69 0.286178
Target:  5'- gGCUGCgcGCGGC-CGGUCGCGUCg--- -3'
miRNA:   3'- aCGACG--UGCUGuGCCGGCGCAGggac -5'
24096 5' -60.8 NC_005262.1 + 55642 0.69 0.314817
Target:  5'- gGCcGCGCGcuCGUGGCCGCGUCCg-- -3'
miRNA:   3'- aCGaCGUGCu-GUGCCGGCGCAGGgac -5'
24096 5' -60.8 NC_005262.1 + 58411 1.07 0.00049
Target:  5'- gUGCUGCACGACACGGCCGCGUCCCUGc -3'
miRNA:   3'- -ACGACGUGCUGUGCCGGCGCAGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 58903 0.71 0.218051
Target:  5'- cGCUGCGCGAUcaGGCCGgCGgCCCg- -3'
miRNA:   3'- aCGACGUGCUGugCCGGC-GCaGGGac -5'
24096 5' -60.8 NC_005262.1 + 59238 0.67 0.414201
Target:  5'- cGCUgGCGCGAgAUGcGCCGCGcgcgcacgaugaagcCCCUGu -3'
miRNA:   3'- aCGA-CGUGCUgUGC-CGGCGCa--------------GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 60378 0.67 0.395614
Target:  5'- cGCUGaaGCGAUGCGGCuCGCcGUCUCg- -3'
miRNA:   3'- aCGACg-UGCUGUGCCG-GCG-CAGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.