Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24096 | 5' | -60.8 | NC_005262.1 | + | 13362 | 0.69 | 0.29314 |
Target: 5'- cGCgGCACGACgACGuGCaCGCGgCCCUc -3' miRNA: 3'- aCGaCGUGCUG-UGC-CG-GCGCaGGGAc -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 53246 | 0.69 | 0.286178 |
Target: 5'- gGCUGCgcGCGGC-CGGUCGCGUCg--- -3' miRNA: 3'- aCGACG--UGCUGuGCCGGCGCAGggac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 17793 | 0.7 | 0.262194 |
Target: 5'- cGCcuUGCGCGugcaggaacgcgaacACGCGGCUGuCGUCCCa- -3' miRNA: 3'- aCG--ACGUGC---------------UGUGCCGGC-GCAGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 62367 | 0.71 | 0.229316 |
Target: 5'- cGCUGCGCucGACgaaGCGGCCGCGgUCgUGg -3' miRNA: 3'- aCGACGUG--CUG---UGCCGGCGCaGGgAC- -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 19967 | 0.72 | 0.207263 |
Target: 5'- cGC-GCGCGGCcggcccGCGGCCGUGUCgCCg- -3' miRNA: 3'- aCGaCGUGCUG------UGCCGGCGCAG-GGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 17695 | 0.68 | 0.370014 |
Target: 5'- gUGCUucagguaCGCGGCGCGGCCGuCcUCCCa- -3' miRNA: 3'- -ACGAc------GUGCUGUGCCGGC-GcAGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 38963 | 0.68 | 0.370014 |
Target: 5'- gGUgaucgGCACGGCGcCGGCCGCGaUCgCg- -3' miRNA: 3'- aCGa----CGUGCUGU-GCCGGCGC-AGgGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 470 | 0.66 | 0.478846 |
Target: 5'- cGUUGaccucgGCGACGCGGCgCGCGUguUCCa- -3' miRNA: 3'- aCGACg-----UGCUGUGCCG-GCGCA--GGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 42116 | 0.66 | 0.468198 |
Target: 5'- aGCaGCGCGGCGCcGCCGCucagguugcgcguGUCCUUc -3' miRNA: 3'- aCGaCGUGCUGUGcCGGCG-------------CAGGGAc -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 52856 | 0.66 | 0.4501 |
Target: 5'- cUGCUGCGCGuaGCGCGGCuCGaUGUCg--- -3' miRNA: 3'- -ACGACGUGC--UGUGCCG-GC-GCAGggac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 41123 | 0.66 | 0.4501 |
Target: 5'- cGuCUGCGC-ACugGuCCGCG-CCCUGa -3' miRNA: 3'- aC-GACGUGcUGugCcGGCGCaGGGAC- -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 63718 | 0.66 | 0.431472 |
Target: 5'- gUGCgGCGCGGCcgacuucuucGCGaGCCGCGgccUCCCc- -3' miRNA: 3'- -ACGaCGUGCUG----------UGC-CGGCGC---AGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 59238 | 0.67 | 0.414201 |
Target: 5'- cGCUgGCGCGAgAUGcGCCGCGcgcgcacgaugaagcCCCUGu -3' miRNA: 3'- aCGA-CGUGCUgUGC-CGGCGCa--------------GGGAC- -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 51684 | 0.67 | 0.413303 |
Target: 5'- cUGCUcGCGCG-CACGGCgGCGcugauugcgCCCg- -3' miRNA: 3'- -ACGA-CGUGCuGUGCCGgCGCa--------GGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 45633 | 0.67 | 0.413303 |
Target: 5'- cGCUcGCGCGAUcagGCgGGCaCGCGcUCCCg- -3' miRNA: 3'- aCGA-CGUGCUG---UG-CCG-GCGC-AGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 38851 | 0.67 | 0.413303 |
Target: 5'- aGCUGgGCGcgccGCGCGGCCauguGCGcaUCCCg- -3' miRNA: 3'- aCGACgUGC----UGUGCCGG----CGC--AGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 51464 | 0.67 | 0.395614 |
Target: 5'- aUGCUGCcgccgcgcgcuGCGGCACGaGCCGCaUgCCg- -3' miRNA: 3'- -ACGACG-----------UGCUGUGC-CGGCGcAgGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 60378 | 0.67 | 0.395614 |
Target: 5'- cGCUGaaGCGAUGCGGCuCGCcGUCUCg- -3' miRNA: 3'- aCGACg-UGCUGUGCCG-GCG-CAGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 50952 | 0.67 | 0.386954 |
Target: 5'- aGCUcgGCACGACGguucccgcgaGGCCGCGcUCCUUc -3' miRNA: 3'- aCGA--CGUGCUGUg---------CCGGCGC-AGGGAc -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 46314 | 0.67 | 0.378421 |
Target: 5'- cGC-GCGCGGCGCGcGCUuCGUCCUg- -3' miRNA: 3'- aCGaCGUGCUGUGC-CGGcGCAGGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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