miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24096 5' -60.8 NC_005262.1 + 13524 0.68 0.32993
Target:  5'- gGCUcgGC-CGGCGCGGgCGCG-CCCUc -3'
miRNA:   3'- aCGA--CGuGCUGUGCCgGCGCaGGGAc -5'
24096 5' -60.8 NC_005262.1 + 17793 0.7 0.262194
Target:  5'- cGCcuUGCGCGugcaggaacgcgaacACGCGGCUGuCGUCCCa- -3'
miRNA:   3'- aCG--ACGUGC---------------UGUGCCGGC-GCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 14635 0.68 0.32993
Target:  5'- cGCUGCGgcCGAUGCGGCCuGCacgCCCa- -3'
miRNA:   3'- aCGACGU--GCUGUGCCGG-CGca-GGGac -5'
24096 5' -60.8 NC_005262.1 + 50952 0.67 0.386954
Target:  5'- aGCUcgGCACGACGguucccgcgaGGCCGCGcUCCUUc -3'
miRNA:   3'- aCGA--CGUGCUGUg---------CCGGCGC-AGGGAc -5'
24096 5' -60.8 NC_005262.1 + 53246 0.69 0.286178
Target:  5'- gGCUGCgcGCGGC-CGGUCGCGUCg--- -3'
miRNA:   3'- aCGACG--UGCUGuGCCGGCGCAGggac -5'
24096 5' -60.8 NC_005262.1 + 34998 0.69 0.307459
Target:  5'- aUGCgcggGCGCGAgguCACGGUCGaCGUCCa-- -3'
miRNA:   3'- -ACGa---CGUGCU---GUGCCGGC-GCAGGgac -5'
24096 5' -60.8 NC_005262.1 + 62367 0.71 0.229316
Target:  5'- cGCUGCGCucGACgaaGCGGCCGCGgUCgUGg -3'
miRNA:   3'- aCGACGUG--CUG---UGCCGGCGCaGGgAC- -5'
24096 5' -60.8 NC_005262.1 + 41569 0.72 0.191948
Target:  5'- gGCgUGgGCGGCGCGGCCGUGagCUUGu -3'
miRNA:   3'- aCG-ACgUGCUGUGCCGGCGCagGGAC- -5'
24096 5' -60.8 NC_005262.1 + 60378 0.67 0.395614
Target:  5'- cGCUGaaGCGAUGCGGCuCGCcGUCUCg- -3'
miRNA:   3'- aCGACg-UGCUGUGCCG-GCG-CAGGGac -5'
24096 5' -60.8 NC_005262.1 + 51464 0.67 0.395614
Target:  5'- aUGCUGCcgccgcgcgcuGCGGCACGaGCCGCaUgCCg- -3'
miRNA:   3'- -ACGACG-----------UGCUGUGC-CGGCGcAgGGac -5'
24096 5' -60.8 NC_005262.1 + 38963 0.68 0.370014
Target:  5'- gGUgaucgGCACGGCGcCGGCCGCGaUCgCg- -3'
miRNA:   3'- aCGa----CGUGCUGU-GCCGGCGC-AGgGac -5'
24096 5' -60.8 NC_005262.1 + 17695 0.68 0.370014
Target:  5'- gUGCUucagguaCGCGGCGCGGCCGuCcUCCCa- -3'
miRNA:   3'- -ACGAc------GUGCUGUGCCGGC-GcAGGGac -5'
24096 5' -60.8 NC_005262.1 + 46314 0.67 0.378421
Target:  5'- cGC-GCGCGGCGCGcGCUuCGUCCUg- -3'
miRNA:   3'- aCGaCGUGCUGUGC-CGGcGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 43815 0.72 0.191948
Target:  5'- gGCgaucGCgGCGACACGGCCGCGggCCg- -3'
miRNA:   3'- aCGa---CG-UGCUGUGCCGGCGCagGGac -5'
24096 5' -60.8 NC_005262.1 + 24823 0.66 0.478846
Target:  5'- aGCU-CGCGAuCGCGGCCgGCG-CCgUGc -3'
miRNA:   3'- aCGAcGUGCU-GUGCCGG-CGCaGGgAC- -5'
24096 5' -60.8 NC_005262.1 + 47742 0.66 0.4501
Target:  5'- cUGgUGCGCcGC-CGGCCGCGgcgaaCCCg- -3'
miRNA:   3'- -ACgACGUGcUGuGCCGGCGCa----GGGac -5'
24096 5' -60.8 NC_005262.1 + 63296 0.66 0.444465
Target:  5'- gGCUGCuggcuCGGCgucgacguggaacacGCGcGCCGCGUCgCCg- -3'
miRNA:   3'- aCGACGu----GCUG---------------UGC-CGGCGCAG-GGac -5'
24096 5' -60.8 NC_005262.1 + 22212 0.66 0.44073
Target:  5'- gGCUcGCGCucgacaagcuCACGGCCGCGccgCCCa- -3'
miRNA:   3'- aCGA-CGUGcu--------GUGCCGGCGCa--GGGac -5'
24096 5' -60.8 NC_005262.1 + 22118 0.69 0.312596
Target:  5'- cUGCUGCACGugGcCGgcaaucgucuggccGCCGCGgcugCCCg- -3'
miRNA:   3'- -ACGACGUGCugU-GC--------------CGGCGCa---GGGac -5'
24096 5' -60.8 NC_005262.1 + 50158 0.69 0.314817
Target:  5'- aGCUGCGCGAC-CGcCUGCGcuaCCUGa -3'
miRNA:   3'- aCGACGUGCUGuGCcGGCGCag-GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.