miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24096 5' -60.8 NC_005262.1 + 60378 0.67 0.395614
Target:  5'- cGCUGaaGCGAUGCGGCuCGCcGUCUCg- -3'
miRNA:   3'- aCGACg-UGCUGUGCCG-GCG-CAGGGac -5'
24096 5' -60.8 NC_005262.1 + 51464 0.67 0.395614
Target:  5'- aUGCUGCcgccgcgcgcuGCGGCACGaGCCGCaUgCCg- -3'
miRNA:   3'- -ACGACG-----------UGCUGUGC-CGGCGcAgGGac -5'
24096 5' -60.8 NC_005262.1 + 50952 0.67 0.386954
Target:  5'- aGCUcgGCACGACGguucccgcgaGGCCGCGcUCCUUc -3'
miRNA:   3'- aCGA--CGUGCUGUg---------CCGGCGC-AGGGAc -5'
24096 5' -60.8 NC_005262.1 + 46314 0.67 0.378421
Target:  5'- cGC-GCGCGGCGCGcGCUuCGUCCUg- -3'
miRNA:   3'- aCGaCGUGCUGUGC-CGGcGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 17695 0.68 0.370014
Target:  5'- gUGCUucagguaCGCGGCGCGGCCGuCcUCCCa- -3'
miRNA:   3'- -ACGAc------GUGCUGUGCCGGC-GcAGGGac -5'
24096 5' -60.8 NC_005262.1 + 38963 0.68 0.370014
Target:  5'- gGUgaucgGCACGGCGcCGGCCGCGaUCgCg- -3'
miRNA:   3'- aCGa----CGUGCUGU-GCCGGCGC-AGgGac -5'
24096 5' -60.8 NC_005262.1 + 41924 0.68 0.370014
Target:  5'- gGCUGCGCGgu-CGGCUucaGCGccgaUCCCUGc -3'
miRNA:   3'- aCGACGUGCuguGCCGG---CGC----AGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 42625 0.68 0.370014
Target:  5'- cGCUGCcgaACGGCAugaUGGCCGCcUUCCg- -3'
miRNA:   3'- aCGACG---UGCUGU---GCCGGCGcAGGGac -5'
24096 5' -60.8 NC_005262.1 + 38800 0.68 0.361736
Target:  5'- cGCUGCACGGCGCGagcaacggauacGCUGacCGUCUCg- -3'
miRNA:   3'- aCGACGUGCUGUGC------------CGGC--GCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 12653 0.68 0.361736
Target:  5'- aGaaGCGCG-CGCGGCgCGCGgcgaaCCCUGc -3'
miRNA:   3'- aCgaCGUGCuGUGCCG-GCGCa----GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 10083 0.68 0.361736
Target:  5'- aGCgccacgGCcuuCGACGCGGCCGgGUUCUg- -3'
miRNA:   3'- aCGa-----CGu--GCUGUGCCGGCgCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 33341 0.68 0.353588
Target:  5'- cGCUGCGCGGCAcCGuGCCGCcgaucgacaaCCCg- -3'
miRNA:   3'- aCGACGUGCUGU-GC-CGGCGca--------GGGac -5'
24096 5' -60.8 NC_005262.1 + 10474 0.68 0.337684
Target:  5'- aGCgGCGCG-CGCGGUCGCucgCCUUGu -3'
miRNA:   3'- aCGaCGUGCuGUGCCGGCGca-GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 14635 0.68 0.32993
Target:  5'- cGCUGCGgcCGAUGCGGCCuGCacgCCCa- -3'
miRNA:   3'- aCGACGU--GCUGUGCCGG-CGca-GGGac -5'
24096 5' -60.8 NC_005262.1 + 13524 0.68 0.32993
Target:  5'- gGCUcgGC-CGGCGCGGgCGCG-CCCUc -3'
miRNA:   3'- aCGA--CGuGCUGUGCCgGCGCaGGGAc -5'
24096 5' -60.8 NC_005262.1 + 46613 0.69 0.322307
Target:  5'- uUGCUGa---ACGCGGUCGCGUCCUc- -3'
miRNA:   3'- -ACGACgugcUGUGCCGGCGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 52612 0.69 0.314817
Target:  5'- cGC-GCACGAuCACGGCgGCGUCgUCg- -3'
miRNA:   3'- aCGaCGUGCU-GUGCCGgCGCAG-GGac -5'
24096 5' -60.8 NC_005262.1 + 50158 0.69 0.314817
Target:  5'- aGCUGCGCGAC-CGcCUGCGcuaCCUGa -3'
miRNA:   3'- aCGACGUGCUGuGCcGGCGCag-GGAC- -5'
24096 5' -60.8 NC_005262.1 + 25461 0.69 0.314817
Target:  5'- cGCUGCGCGAgGCGauGCCGC-UCgCCa- -3'
miRNA:   3'- aCGACGUGCUgUGC--CGGCGcAG-GGac -5'
24096 5' -60.8 NC_005262.1 + 55642 0.69 0.314817
Target:  5'- gGCcGCGCGcuCGUGGCCGCGUCCg-- -3'
miRNA:   3'- aCGaCGUGCu-GUGCCGGCGCAGGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.