miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24097 3' -61.2 NC_005262.1 + 58949 0.68 0.374418
Target:  5'- gGUCGGcGCgCaGCAGUCGAaccagccggccgccgGCGGCCu -3'
miRNA:   3'- gCAGUC-CGaGcCGUCAGCU---------------CGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 33094 0.68 0.3711
Target:  5'- -uUCGGGgUCcguuuccuggaGGCGGUCGAGC-GCCGu -3'
miRNA:   3'- gcAGUCCgAG-----------CCGUCAGCUCGcCGGC- -5'
24097 3' -61.2 NC_005262.1 + 46408 0.68 0.354817
Target:  5'- uCGUCGGGCUgGGCccgcaaGGUCcGcAGgGGCCc -3'
miRNA:   3'- -GCAGUCCGAgCCG------UCAG-C-UCgCCGGc -5'
24097 3' -61.2 NC_005262.1 + 52359 0.68 0.346867
Target:  5'- gCG-CGGGCgCGGCGuGUCGcgcaccuucGGCGGCCc -3'
miRNA:   3'- -GCaGUCCGaGCCGU-CAGC---------UCGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 59963 0.68 0.344506
Target:  5'- aCGUCacgcgcggGGcGCUCGGCAccuuccuccgggccGUCGAGgaUGGCCGg -3'
miRNA:   3'- -GCAG--------UC-CGAGCCGU--------------CAGCUC--GCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 24976 0.69 0.323787
Target:  5'- --aCAGGC-CGGCuuGGUCGAgGCGGCa- -3'
miRNA:   3'- gcaGUCCGaGCCG--UCAGCU-CGCCGgc -5'
24097 3' -61.2 NC_005262.1 + 17239 0.69 0.316352
Target:  5'- uCGUCguGGGCgucgCGGgAG-CG-GCGGCCGg -3'
miRNA:   3'- -GCAG--UCCGa---GCCgUCaGCuCGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 25662 0.69 0.309046
Target:  5'- aGUCGGGCauUCuGGUcaucgAGUCGA-CGGCCGa -3'
miRNA:   3'- gCAGUCCG--AG-CCG-----UCAGCUcGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 13470 0.69 0.30187
Target:  5'- uCGUCcuGCgCGGCGGgCGcuGCGGCCGg -3'
miRNA:   3'- -GCAGucCGaGCCGUCaGCu-CGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 29642 0.7 0.281116
Target:  5'- ----cGGCaUCGGCAG-CGAGCGGCa- -3'
miRNA:   3'- gcaguCCG-AGCCGUCaGCUCGCCGgc -5'
24097 3' -61.2 NC_005262.1 + 62320 0.7 0.267918
Target:  5'- gCGgCAGcGC-CGGCAGaCGAGCGGgCGg -3'
miRNA:   3'- -GCaGUC-CGaGCCGUCaGCUCGCCgGC- -5'
24097 3' -61.2 NC_005262.1 + 251 0.7 0.264058
Target:  5'- uCGUCAGGCUCGGuCGuucauccgucaccucGUCucGCGGCUc -3'
miRNA:   3'- -GCAGUCCGAGCC-GU---------------CAGcuCGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 29132 0.7 0.255226
Target:  5'- aGUCGGGauagCGGUcgucgagccAGUCGAGCGacGCCGg -3'
miRNA:   3'- gCAGUCCga--GCCG---------UCAGCUCGC--CGGC- -5'
24097 3' -61.2 NC_005262.1 + 13711 0.71 0.237118
Target:  5'- gCGgcgCGGGUUCGGuCGG-CGcAGCGGCCu -3'
miRNA:   3'- -GCa--GUCCGAGCC-GUCaGC-UCGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 56277 0.72 0.204131
Target:  5'- -aUCGGGCUCGGCgagcAGUCGGcgaagaaccGCGGCUu -3'
miRNA:   3'- gcAGUCCGAGCCG----UCAGCU---------CGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 39783 0.72 0.184412
Target:  5'- uGUaCAGGCUCGGCacGGUUGcuUGGCCGu -3'
miRNA:   3'- gCA-GUCCGAGCCG--UCAGCucGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 10446 0.72 0.183942
Target:  5'- cCGaUCAGGUUCGcGCGGUCGgcgagguAGCGGCgCGc -3'
miRNA:   3'- -GC-AGUCCGAGC-CGUCAGC-------UCGCCG-GC- -5'
24097 3' -61.2 NC_005262.1 + 13516 0.74 0.149972
Target:  5'- cCGUCacGGGCUCGGCcGgcgCGGGCGcGCCc -3'
miRNA:   3'- -GCAG--UCCGAGCCGuCa--GCUCGC-CGGc -5'
24097 3' -61.2 NC_005262.1 + 30857 0.74 0.149972
Target:  5'- aCGUCGGGaugaCGGCcgaggAGUcgcCGAGCGGCCGg -3'
miRNA:   3'- -GCAGUCCga--GCCG-----UCA---GCUCGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 58629 1.09 0.000356
Target:  5'- cCGUCAGGCUCGGCAGUCGAGCGGCCGg -3'
miRNA:   3'- -GCAGUCCGAGCCGUCAGCUCGCCGGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.