miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24097 5' -57.2 NC_005262.1 + 7525 0.66 0.642037
Target:  5'- -aCUGCucgcCGAGCCCGAuGUCCGUGa -3'
miRNA:   3'- aaGAUGcua-GUUCGGGCU-CGGGCGCa -5'
24097 5' -57.2 NC_005262.1 + 29646 0.66 0.642037
Target:  5'- aUCggcaGCGAgcggCAugccGCCCGcGCCCGCGc -3'
miRNA:   3'- aAGa---UGCUa---GUu---CGGGCuCGGGCGCa -5'
24097 5' -57.2 NC_005262.1 + 58755 0.66 0.620264
Target:  5'- -cCgcCGAUCAGGCgCCG-GCCgGCGa -3'
miRNA:   3'- aaGauGCUAGUUCG-GGCuCGGgCGCa -5'
24097 5' -57.2 NC_005262.1 + 41580 0.66 0.620264
Target:  5'- ---cGCGGccgugagcuugUCGAGCgCGAGCCCgGCGUu -3'
miRNA:   3'- aagaUGCU-----------AGUUCGgGCUCGGG-CGCA- -5'
24097 5' -57.2 NC_005262.1 + 17383 0.66 0.620264
Target:  5'- -cCUGCGGaccuugCGGGCCC-AGCCCGaCGa -3'
miRNA:   3'- aaGAUGCUa-----GUUCGGGcUCGGGC-GCa -5'
24097 5' -57.2 NC_005262.1 + 18575 0.66 0.609388
Target:  5'- ---gGCGuUCAGG-CCGAGCCCgGCGg -3'
miRNA:   3'- aagaUGCuAGUUCgGGCUCGGG-CGCa -5'
24097 5' -57.2 NC_005262.1 + 7775 0.66 0.598532
Target:  5'- cUUCUGCG--CGAGCCCGcgcauggagAGCuuGCGg -3'
miRNA:   3'- -AAGAUGCuaGUUCGGGC---------UCGggCGCa -5'
24097 5' -57.2 NC_005262.1 + 50026 0.66 0.587703
Target:  5'- ----cCGAagUgAAGCCCGAGCCgGCGc -3'
miRNA:   3'- aagauGCU--AgUUCGGGCUCGGgCGCa -5'
24097 5' -57.2 NC_005262.1 + 60048 0.67 0.576911
Target:  5'- -gCU-CGAUC--GCCUGAGCCgCGCGg -3'
miRNA:   3'- aaGAuGCUAGuuCGGGCUCGG-GCGCa -5'
24097 5' -57.2 NC_005262.1 + 58908 0.67 0.566164
Target:  5'- ---cGCGAUCAGGCCgGcGGCCCGa-- -3'
miRNA:   3'- aagaUGCUAGUUCGGgC-UCGGGCgca -5'
24097 5' -57.2 NC_005262.1 + 58755 0.67 0.566164
Target:  5'- ---cACGAUCGAGCaguaCGAGCaggcacccuCCGCGUu -3'
miRNA:   3'- aagaUGCUAGUUCGg---GCUCG---------GGCGCA- -5'
24097 5' -57.2 NC_005262.1 + 26605 0.67 0.535318
Target:  5'- aUCaACGuccgCAAGCCCGcgggcaaaucgaagcGCCCGCGUa -3'
miRNA:   3'- aAGaUGCua--GUUCGGGCu--------------CGGGCGCA- -5'
24097 5' -57.2 NC_005262.1 + 40029 0.67 0.534264
Target:  5'- gUCaGCGAUCAGGUgUGAaaaaGCCCGCa- -3'
miRNA:   3'- aAGaUGCUAGUUCGgGCU----CGGGCGca -5'
24097 5' -57.2 NC_005262.1 + 35052 0.68 0.523769
Target:  5'- aUUCUucACGGUCAucacggcGUCCGGGCgCGCGg -3'
miRNA:   3'- -AAGA--UGCUAGUu------CGGGCUCGgGCGCa -5'
24097 5' -57.2 NC_005262.1 + 22342 0.68 0.523769
Target:  5'- -gCUGCGGUCAgcguaacgguAGCCgCGccGCCCGUGUu -3'
miRNA:   3'- aaGAUGCUAGU----------UCGG-GCu-CGGGCGCA- -5'
24097 5' -57.2 NC_005262.1 + 50556 0.68 0.491768
Target:  5'- -gCU-CGcgCAcccguucaaccgcAGCCCGAGCCCGCu- -3'
miRNA:   3'- aaGAuGCuaGU-------------UCGGGCUCGGGCGca -5'
24097 5' -57.2 NC_005262.1 + 31626 0.69 0.452851
Target:  5'- -cCUGCGcggCAAGCCgaccuacggCGAuGCCCGCGUg -3'
miRNA:   3'- aaGAUGCua-GUUCGG---------GCU-CGGGCGCA- -5'
24097 5' -57.2 NC_005262.1 + 24804 0.69 0.443143
Target:  5'- aUC-GCGAagggCAAGCgCGAGCUCGCGa -3'
miRNA:   3'- aAGaUGCUa---GUUCGgGCUCGGGCGCa -5'
24097 5' -57.2 NC_005262.1 + 21403 0.7 0.396444
Target:  5'- gUCuUGCGG-CAcuGGUCCGAGCUCGCGa -3'
miRNA:   3'- aAG-AUGCUaGU--UCGGGCUCGGGCGCa -5'
24097 5' -57.2 NC_005262.1 + 20922 0.7 0.396444
Target:  5'- ---gGCGAUCGcauAGCCgaggucgaCGAGCCCGCGc -3'
miRNA:   3'- aagaUGCUAGU---UCGG--------GCUCGGGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.